mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTCGGTTCGGTTCGGTTTT AACCGAACCGAACCAAACCGA AAAACCGATATATTCGGTTCGGTTCGGTTTTTGGCTAAAACCGAACCGAACCAAACCGACCCATGC GCATTAGTAAGTTGTGAAAGTAATTGTAATTGTATTTTTTTGTTTGTACAACAACTTGAATATATATTGACACTTGAACCGAAAAATAACCGAAACCGAACCGAAAAAAACCGAAACCGAACCGAAACCGAAAGAAACCGAACCGATAAAAAACCGACATACACGGTTTTTAATTTTACAAAAACCGATATATTCGGTTCGGTTCGGTTTTTGGCTAAAACCGAACCGAACCAAACCGACCCATGCACACCCCTACACCATACACCGCTTCAATCTGTCATTGTTTTCCTAGTTAAGGAAATGACCGGAGTAAAATACGACGATCTCTCAACGGACAAATGCTCGTCCGTTTTTTTCGCATAAACATCAAAGACAACATCAACATTAATTGAGCTCCCAAAGTGGGCAACTAACATGGGCTCCGCGAAAGCCCGAACATAGTTCGCCACAAATTTACCGCTCGTGTTGTTTTTGTTTGAAACCATGTTGTCGTAGTTGTTGTCGTCTTCGTTGGCGTCTAATGGAACCAAAAACAACTTCCATCTTGTCCAAATTGAAAGGACCCTTCACTCTCGATTGCCGTACTGATTTCTTGTATAGACGGGCGTATATCGGAATGTTAAACGAGTGCAAATCCTCCTCCTTCACAAGCCCCTCTGCACCATATCGGAAAGTG 5 0 5' arm Mimulus_guttatus mirnest 100 100 -26.2 ...............((((((((((((((((.....)))))))))))))))).............. (-26.2)