mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTACATTGTGAAATGGAGGG CTCCATTTCACAATATAAGTC CGGAGCTACTTCCTCCATTTCACAATATAAGTCATTCTAGTATTTTCCACATTAACATCAATGTATCTAGATTCATTAATATCAAAATAAATGTGGAAAATGCTAGAATAACTTACATTGTGAAATGGAGGGAGTAGACCA GCACGAGGCTCGTGCTTTCCCTTCAGTAGTTAAGCGTAGAGAATTTGAGGCCATGGCAATCAGCAGAAGGAGCTCCATGCTGTTGGTGATGGCCTTAGTGCTTGGGACGGTCTCCCTTGCCACGGCCGCATCTGGAGTCGCCACCTTCTACACTCAATACACACCGTCGGCGTGCTACGGGAACAGGAACATGGGGAACATGGTGGCGGCGGCGAACGACAGGTTGTACAACAACGGCGCCGTGTGCGGGCGGTGCTACGCCGTGAAGTGCGCCGGCGCGGCGGCCGGCGGCGGCGGAGGCAACCCCTGCACCGGCGCCAGCGTCACCGTGAAGATGGTCGACAACTGCGCCAGCAGCGACGGGTGCACGAGCACCATCGACCTCTCCAGGGAGGCCTTCGCCAAGATCGCCAACCTCGACGCCGGCGTCATCAGGATCACCTACAACCCAACGGTATGTCCGTAGAGTTTCGGAGCTACTTCCTCCATTTCACAATATAAGTCATTCTAGTATTTTCCACATTAACATCAATGTATCTAGATTCATTAATATCAAAATAAATGTGGAAAATGCTAGAATAACTTACATTGTGAAATGGAGGGAGTAGACCATATAATTATTATTATGGTCATC 1 0 3' arm Oryza_sativa mirnest MIR1122 4e-32 osa-MIR808 8e-21 -63.204 .((..(((((((((((((((((((((.(((((.((((((((((((((((((((....................................)))))))))))))))))))).))))).))))))))))))))))))))).)). (-63.204)