mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTAGATTCACGCACAAACTCG CGTTTGTGCGTGAATCTGACA AATCTGAAAGAGGCATATTTCACGTTTGTGCGTGAATCTGACAACCCTTTTTTCATCATTAAATCTATTTTTATCTCATGGGTTGTGTTTGTTAGATTCACGCACAAACTCGCAATATGTCTTTTCCAACT GGAACTCATCTTTATTAGGGATTTACCCTCTGAATCTGAAAGAGGCATATTTCACGTTTGTGCGTGAATCTGACAACCCTTTTTTCATCATTAAATCTATTTTTATCTCATGGGTTGTGTTTGTTAGATTCACGCACAAACTCGCAATATGTCTTTTCCAACTTTACGATTGCAGGGAGAAAGCCTGTTTGCAGAAATGCACAGGGGAATGCTATGTACTATTGACCCGAAGCATGTAGGGCATGGCCGGTATCTTCCTATCTCATATCACAGCATTAGCTCTTAGGGAGAGTTGATCAGTTACAGTCAGAAATATGTGCAGCAGGGGAATATGCTTACTGCTCCGCACTCGGGAGCTCAACAATAAATGGTTGGGAAGAAATTGATGATTCAATAAGGCAGGTGCACTCCTTGAAGTACTCCCGGAAGATGATGCTTGCAATAGGTTCCATTCTGTTCAAATGCCCTGTAGAGTTCAAGGAAAAGTTTAAGCATGACGTCACTACCATCCATTTGCTTCCTGTAGTTCAACAGAATGTAGTGAGCCCTTGTCCTAAAGTATCCCTCTACAAAATCTTGGAAGTTCAAAGGGGATTCCCTCAGCATATAAAGCATGCCCTTGCTTGTC 3 0 3' arm Nicotiana_tabacum mirnest MIR403 0.00003 tcc-MIR403a 0.000000002 -42.4 ....((.((((((((((((....(((((((((((((((((((((.......(((((...((((......))))....)))))......)))))))))))))))))))))....)))))))))))).))... (-42.4)