mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCATCACCA GTGGTGGCGATGGCGGCGCT TGGATGCCTCAATCATCATCATGCCTGCGGTGGTGGTGGCGATGGCGGCGCTTCTTTTCATCGTCATCGTCATCATCATCACCACCATGTTGGTATTTGTGACGGCCGTATCC AATAAAGAAATTTTATACTTCCATGCACGATACTGCAATGTTTAGGAATTTATTTAAACACTCATACAGCACGCTGTAGTTTTGCCATGTAGTTTTGCCAACCATATAAAGATAGAAACAAGTCCACAGAAAGACACCATGAAAACAACAGGGTTTCATGAAACCCTTCATTATTAAAATATCATTCTGCATGTTGATAGTAACTGAAACATGGATGCCTCAATCATCATCATGCCTGCGGTGGTGGTGGCGATGGCGGCGCTTCTTTTCATCGTCATCGTCATCATCATCACCACCATGTTGGTATTTGTGACGGCCGTATCCTTCTTCCTCTTGCTCAGCACGAGAGTAAGAAGGCTTACGATACTCCCCTTCTCCCTCTTGCTGAGGGCTGGGGCTTGCGCTTGCGTCGCGCAGTTTCCCGCTTTCCTCTTGGTCGGCAGCATAAGCAGAGGCACAAGGAGGAGCCACATGGCCATGCTCGGCAATCCAACCCCTCGCCCATTCTCGACGTCCTCCTCGCTCGCCAACGACCAGAGCCAATCCTACATCACGCTCACCCACCGGGTCACCTGCAATCGAGAGATCAAACGCAGTANATTCATCGGATTTGCTGCTCCGGTCGTCGACGAAGAATCCGCATTCAGTTTTCTCTCTGAGGTTCGTGATCCGCGTGCAACTCACAACTGCTGGGCCTACAAGCT 2 1 3' arm Nuphar_advena mirnest mir-598 0.00002 ath-MIR414 0.00009 -38 .((((((.....((.((((.(((((.(((((((((((((.((((((((.((...........))..)))))))).)))))))))))..)).)))))..)))).))..)))))) (-38)