mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTACTCCCTCTGTCCCATAAT TTCGGGGACGGAGGGAGTATAT TATATAACATTCTACTCCCTCTGTCCCATAATAAATGTTTCAGATTTGTCAAAATTTGGATGAACCTATATACTAAATAGTGTCTAGATTCATCTAAATTTTGAAAAATCCAAGACATCTATTTCGGGGACGGAGGGAGTATATTTCTTTCT GTGAGAAACGGCACGGTAACTTCCTCCTATAGCACGTGACATATATAACATTCTACTCCCTCTGTCCCATAATAAATGTTTCAGATTTGTCAAAATTTGGATGAACCTATATACTAAATAGTGTCTAGATTCATCTAAATTTTGAAAAATCCAAGACATCTATTTCGGGGACGGAGGGAGTATATTTCTTTCTATACATCCCTTTGTACTAGTAGTAAAACCTTTCCTATACGTAGTACATCTAAATCTTATACTGTAGTATACACGTTTGCTCTATCCTCTGTGTGTAAAAGTAGCATTTCATTCCCTGAACTCGTTTCTTCTTCCAAGCACCTGAACGAAGCCGGCGACGGCCGCGCCGATGACGAACCAGGTCACGCCGGCCAGGACGACCTGCAGCTCGAAGCTGTTGACCGCCCCCAGAGCTGCCGCGCCGCCAACGTGGTCCTCGATCACGCCTCCGGCCATCTCCATCTCCTCCCTGTTGTACCCGACGAACCCCGCGGCAACGATGCCCATCAGCAGCGGCGCCGTCAGGTCGATCCTCGCACGCCTCGCGGGCGCTCTCTCGCCACTGGCTGGTCTACGCAGCGCTCTCTCCGTGACGGCGCCGCGCTCTGAGCGTCCGGCGACTGGAAATTGGCCGAAGACGGCAGGTTCAGCTGCGGGGTCCAGTACTCGTCCCGGTGGCGGGCGTGCACCGCCGACGCCGTCGTGCCTTCTGCTTTGCGCCGCGCCGCTGCCTCCTTGAGCCTCCTC 3 1 5' arm Avena_barbata mirnest MIR1122 0.000002 100 -63.6 ............(((((((((((((((..((((.((((((..(((((.((((((((((((((((.(((.(((((....))))).))).)))))))))))))))).)))))..)))))).))))...)))))))))))))))........... (-63.6)