mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATACTCCCTCTGTCCCAAATA TTTTTGGAACGAAGGGAGTAGAA TCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAATCCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACA AGAATAAAGGAAATCATTTAATTATTACTTCCTCCAATCCAAATTAATTGACACAGATTTGTCTAGGATCGGAGGGAGTACTACTTCAGATCATAGTCCACAACATATAATGAAGCATTTAGACTTGGCTACCTGATGTGCTAGCGAGCCAAAGGCCCAAAGTAAGAATACATCCATCTTTACATCTACTTTTCAAGTACCGAGAAGTAACCAGGCCTTTTCGTGACACAGTTACACTGTATTATTTCATGATGTCTACTGGATCTACCATAAAAAAAAATTGATACATTCACCAAAAGAATGGATGTCACATTCGAAAGAATCATACTCCCTCTGTCCCAAATAAGTGACTTTGATTTGTCTAGATTCACAGACACATTTTAGTGTGTAGATACATGTGAATCTACACAAATCCAAGTCACTTATTTTTGGAACGAAGGGAGTAGAAGTGTGACAGAAGAATTAGGAAACCAGTTAGCCAATGTCAAGGTGATATGCTCATAGACTCGTGACAACACAACATCCTGTTTTTCCTGACCAAACTTGAATAGATAAATCAAGCAGGTGTTGCTGCCTTGCCACCATCCGATCCACTGACACCTTTAAAGTTCAATATTCCAGAAAGGCCTCGTCCTTTAGCGAGGCGCTCAAGTTCATCCAGCTTCCGTTTAAGATCTTCTAAATCGTTAGCTAAACTCTCTTCCCTTTGTTTCAATTCCTCAAGTTCCTGTTGCGTGCTTCCTCCTTTCTAGCCTCTGACCTAGCACTTCTTTGCACCTCAAAAATCAAGCAGCGA 3 2 5' arm Avena_barbata mirnest MIR1122 3.0E-8 far-MIR1122 3.0E-5 -63.4 ((....))....((((((((.(((.(((((((((((((((.(((((((.((((((((((.((((((....)))))).......)))))))))).))))))).))))))))))..))))).))).))))))))........... (-63.4)