mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCGTCTTCTTCCTCGACAT GTTAGAGGAGGAAGATGAGGGT CATGGGCCCATGTCTCCTCCACATCGTCTTCTTCCTCGACATCCACCTCTTGCATTATCTTGGTGAGAAGAACCATCAACTCCAAGATCCTCTCTAAGGCCATTGAGTATTGCAACAAGCACATCACGCCACCTCCAAGTTCATTGAGATCAGCCACACACTTCGATCTCATCATGGATTCATGTTAGAGGAGGAAGATGAGGGTGATGAATTATTTCTGTTA TCTTCAACTGGTTTGTCGATCCTTGAAACTTCTCCAGCAAGGAATCCATTTTTACTGATAGTGGGTCATGTGACAGTGACTTCCATGCCCCATGGAAGGGCTCTATGCAGGAATATCTGGTCCAGACAACAAAATAACTTATTGGACAAGCATTGGATGAACATGGGGGTGGTGCATCAGGTCAAATAATGTGCAGTCATAGTATCCTGAGAACTGAGAGCAACTCGTGACCGCCACCGCAGCAGCCACTTGACCACTTCCACCTCCGCGGTGGCCTCTGCCTTCTTGGCATCCACCATGGGCCCATGTCTCCTCCACATCGTCTTCTTCCTCGACATCCACCTCTTGCATTATCTTGGTGAGAAGAACCATCAACTCCAAGATCCTCTCTAAGGCCATTGAGTATTGCAACAAGCACATCACGCCACCTCCAAGTTCATTGAGATCAGCCACACACTTCGATCTCATCATGGATTCATGTTAGAGGAGGAAGATGAGGGTGATGAATTATTTCTGTTATTGTCCATCTGAAAGAAGAAAAACCACATTGCTCAATCATCCCTTCCGGACAAACTTCAGAGTGATATTTTTCACTCGAGGTATTCTGTTCCAGGGCAATTTCAGTTTCCTTTTTGAGATCTCAGACAAACTTACTGAAAAGGATAGCTT 2 1 5' arm Panicum_virgatum mirnest 100 100 -48.6 ...((((....))))....(((.(((((((((((((((((((..(((..............)))((((.((................)).))))...(((...(((....(((.....)))..))).)))...((((.......(((((((.............)))))))...))))...))))).))))))))))))))..)))..(((....)))..... (-48.6)