mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAACTCGGTTTGTTGGCTTT GGCAGCAAACATGGGAAATAA AAAATTCCACGAGGGCAGCAAACATGGGAAATAATGAACTCGGTTTGTTGGCTTTTCTCCTTATT AGCAGCACTAGGGCAAAAATAAGGGCAAGTCCCCCAAATGTAATTTGTGAACCATAGCAAGTGAAACCATCATCATCATCATTTTAAAGCCTACGACTGAGGGGCTGAGTCAATTCAAGTTTGAAAAATATCGAGAGAGACAAGGGGGGTGAATAGCTTCAGGGCGTGCTATTCATTCAGTAAAAATTCCACGAGGGCAGCAAACATGGGAAATAATGAACTCGGTTTGTTGGCTTTTCTCCTTATTCGCGAA 4 2 3' arm Panicum_virgatum mirnest 100 100 -12.5 ..........(((((((((((((.((((..........))))))))))).))))))......... (-12.5)