mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAATGTTGTCCGGCTCGGGG TCGGACCAGGCTTCATTCCCC AGAGAGAGATCAGGGAGCCTTTTCGTCTTTGAGGGGAATGTTGTCCGGCTCGGGGGCGCCGCTCTTTCTCTGACCTGCCCCTTTCTCCTCCATCTCGCTCTTCCTTTCTCTCTTGGAGATCAAGAGGAGATGGGCAGGGGTGAGAGGAGATGGGTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAAAGGATGGGCTCCCCATGCTCTCTGCC GGGTGGCCATTCAGCATGCCAAGCTACGCTTCCTCCCATATACACACACCCTCCTCTTCCCCCTTCTTCTTGCTCACACCCCAAAAGGGCCAGGGAATAAAGCTGAGAGAGAAGTGAGATGAGATGAGAGAGTACAGGTAGGAAGGATCAAGAAGATGTGAGAGTGATCATGGAAAAGTTGGCTAGCTAGAGAGAGAGAGATCAGGGAGCCTTTTCGTCTTTGAGGGGAATGTTGTCCGGCTCGGGGGCGCCGCTCTTTCTCTGACCTGCCCCTTTCTCCTCCATCTCGCTCTTCCTTTCTCTCTTGGAGATCAAGAGGAGATGGGCAGGGGTGAGAGGAGATGGGTGTAGATCTCGGACCAGGCTTCATTCCCCCCAAAAGGATGGGCTCCCCATGCTCTCTGCCTCCATCAGAGCTCGTTCCTGCTGGAGCTTCCTTGCTGCCTCCAAATCTGAACCGAGTAAGCTGATTAATCTGCTGAATAATATCGCGCTTGTTTCCCCCCCTTATCTGCAGTTTTCTTGGTCGTGCATACTCCGTATGGGTAGATCTTGTGTGGCTGGGTGTGGCAGGGGGAAGAGGCTGCACGAGATGCAGATTGATGTAATGATGGGTGGGCATGACTGCATGACTGACCAGTGGCCAGTTGCACACATACCCATGGCTAGCTCATGTGGGGGATCTTCTCTCCCTCTCTTTCCCTTGCAATAATTAGCCCGTGATGACTGCTGGGGAAGGGGAGGGGGAGGAAAAAGTTGCCATCATCATCACCGAATAGAGGCCATACATCGCC 4 0 5' arm Panicum_virgatum mirnest mir-166 0.000000000004 osa-MIR166b 0.00000000000005 -95.5 ..((((((....((((((((.(((...((((.((((((((..(((.((.(((((((((((.(((((.(((...(((((((...(((((((.(((((...................)))))...))))))).)))))))...))))))))...)))))...)))))).)).)))..)))))))).)))).))).))))))))....))))))... (-95.5)