mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCCAAAGGAGATTTGCCCGG GGGCAACACTCCGTTGGCAGG GTGATTGTGGAGGTCCATTGCAGGGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCCCGGCGATGCGCCTGCACTGCTT AAAACCGGCCATGGCTTCAGCATGTGTGAACCAACCTTTGGCATGCAATTGTGATATATTACATGTGGTGATTGTGGAGGTCCATTGCAGGGCAACACTCCGTTGGCAGGTGCTACGCAAACCGGCCCTGCCGCCGGTCACCTGCCAAAGGAGATTTGCCCGGCGATGCGCCTGCACTGCTTCTCGGTGAGCAGCAGAGGAAGAAGCCGTTTTCTTGGGCCCAACAGAGTATCGTTAATCCCAATAAACAAAACAGCCAGAATGGCCTTAATTCAACAAAGACGGCCTATCAGACAGTCCTCTAAAGCCCAAACAGGCCCATGAAAGCCCCTCACATCTAACCTCGCGCTCGCTAAAAAAAATAAAAACTCGCGCCGCCACGGCCTCCTCTCTCGACGCCATCTCCCGCCGCCGGCCAAGGAGAAGAGATCCGGCCGTCTCCCATTGCATCCGACAAAGCAGCAGTCGAACCCGATGCGGGAGACCAAGATTACAACCGGCCGGAGCATTCACAGGATAGCCAGGGCCGCCGCCGCCATCGCTGGGGCAGGCCTGCCGCTGGCGCTGGCCCTGCCTAGCAGGCAGGCTGGCTGCTCGCCGGCCGCCGCCGCCCCTGGCAGGTAGCCAGGCAAGCCGCTGCCCCCGCTTGGCAGGCAGGCAAGGCCCCGGCGTACGGCCGCT 4 0 3' arm Panicum_virgatum mirnest mir-399 0.0000000004 rco-MIR399c 0.0000004 -57.1 ......(((.((((.((((((.((((((..((((.((((((((((........((((((......)))))))))))))))).))))..)))))).)))))).)))).)))..... (-57.1)