mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGAGCTTCTCGAAGATGTCG GCGTGCTTGGCGAGCTCGCCG AGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGG AAGAGTTAAACAAGCACCATTAATATTGCATCTGATAACATTAACAGATTTCACTTCTCACTTCGTACAGAAAGAACATTATCAGGAACCACCAGCACCAAACTACACCATCCTACCAGCCAAACCGAGCAAACTAGCATCACTACCAGGAGCCTTACGCCAACAAAGAGCAGAGGGGAAAGCCTAGCATCTAAGACGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACCGACTTCTTGGCCTTCTTCTTCCCCTTCTTGCCCTCGCCGCCCTCCTTGCCGGCGGACTTGCCAGCGGGGAGCCGCTTCTCGGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCCGCCTTCTCCGTCGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTGGGGGCCATCGACGCGGCTGCTGGGGGGGTTCTGCGGCTGGGATTCGGGTTGGTTGGGGAAAGAGG 3 0 3' arm Panicum_virgatum mirnest 100 100 -56.5 .((((((((..((((.(((((((((((.((((..(((((.(((((...((...(((((....)))))))))))).))))).(((((....((....)).))))).)))).))))))))))).))))..))))))))........ (-56.5)