mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTCTTCCTCTTCCTCTTCCT AGGAGAGCGCGGCGGAAGGAGCG TAGGTAGTAGCGTTGGTTTCTTCTCTTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCTTCTTCTTAAAGGTGCGCGGACGACCTGAAGTACCAGCAGCGATCTCCTCGGGCGTGGAGAAGTTGCGGCGGCCGGTGGGCTTTCCCTTGAACTTTCCCCTCCCCATGGCGGCGGCGGCGGGCGCAGGTAGAGAGGAGAGCGCGGCGGAAGGAGCGGAGGGGTTCGCCTAAGCTGCAC GCAAAAGCAGTGGTGGTAGTACCGTAGTAGTAGTAGTATGTACAGTAGATGTTATTACTCGGGCTAGCAAAGCATGGCTGTAGGACAAGAACAGCAAGAAAAAAGTCTGCGTCCTTCACCTCGGGACAAAAACACCACACCCAAATCTCTCATCTCATCGGGAACACTCACCACCGGCGACAAAGAAGGGATCTTTTTCTGGCTTTTTCTAGCACCCACGGCTCGATCCGTGGATCTGGCGTCGATCCTCGGGGCCTCTCCTTCCTTCCTTCCTTCTACTCCTTCGATCCATGGCGGACGCGCAGATCTCAGATCCAGCAATGGCGGGCACGGTGCACGGACACACACGTACTAGTAGGTAGTAGCGTTGGTTTCTTCTCTTTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCTTCTTCTTAAAGGTGCGCGGACGACCTGAAGTACCAGCAGCGATCTCCTCGGGCGTGGAGAAGTTGCGGCGGCCGGTGGGCTTTCCCTTGAACTTTCCCCTCCCCATGGCGGCGGCGGCGGGCGCAGGTAGAGAGGAGAGCGCGGCGGAAGGAGCGGAGGGGTTCGCCTAAGCTGCACGCGGGGTGTGGGGGCACTGAACCGCC 3 2 5' arm Panicum_virgatum mirnest 100 100 -72.6 ......(((((...((((((((((.((((((((.((..((((((((((.(((..(((.((.((........(((((.(((.....)))..))))).(((((..(((((........))))).))))).((.((((..(((.....................)))..)))).)))).)).)))...))).)))).))))))...)).)))))))).)))))))...)))...))))).. (-72.6)