mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTTGGGACATAGGGAGTACT AACTCAAATAGTCTTAGAATA AACGACTAATAATTTGGGACATAGGGAGTACTTGCAGTTGACAATATCTGATAACCTGAGGTTGAAAACTACTATGCAGCTATATGACGCATAGTCTTATGGAGAACTCAAATAGTCTTAGAATAAAAAAATG GGAAAATCAAAACGACTAATAATTTGGGACATAGGGAGTACTTGCAGTTGACAATATCTGATAACCTGAGGTTGAAAACTACTATGCAGCTATATGACGCATAGTCTTATGGAGAACTCAAATAGTCTTAGAATAAAAAAATGCCCAACTGATGACAAGCACGGAGCAGACACAGATGTGCACCCTCGCCAGTTCAGACCATATCAAAACTCAAACCTCGATGCGACTTCGTTGCGGTTGCTACTCAATCGAGTCAGAAGAACTGAACACTATGCAAGGATATTGCTAGCTACTGAGACCAAGGAATTCAGTGAAGCTGGGATACTTAGGCTCCCACCCGATCTCAGCCTGAGTTTTCGAGTTCTCCATCCTCTTGCCCAATGGACCGTCAGTACCAGTAAATCCTTCAAACTTCGTGTCAAATTTTCCACTTCTGTTGACAGCGTCCATTATTTCTTGCCTGGAAAGAGGCTTATTGTCACAGCCAAGAAAGATTTGATTCCTGAGTCTCTTTTTCATGATCGCTATTGCAAGGGAAGCAGCATCCTCATAATGAATCTGGTTGATGATATGATCTGGTCGTGTGTCCAAAGTTCCTTTCCTCAACCAAAATACATGAGCACCTCTATCTATTTTATAAAGTCCAGCTAGCCTGAGAACACAACCTCCTGCCTCAAGAATAATATTTTCCACTTTCAGAAGTACATCAGTACGAGGGCTCCTACCAATTGGCACTGATGGACAATCCTCATTGCACATCATGT 4 2 5' arm Panicum_virgatum mirnest 100 100 -22.8 .........((.((((((((.((..((((.(((..((((..((((.((.........)).))))..))))(((((((...........)))))))......))).))))...)))))))))).))........ (-22.8)