mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCAGAAGCTGAAGCAGCTGT AGCTGCGGCGGCTGCTGCTCG CCCGGAGGCAGCTGCGGCGGCTGCTGCTCGTGCAGTTGCAGAGGCAGAGGCTATCATGGCAGAAGCTGAAGCAGCTGTGAGAGAGGCA GAATGTAACTGTCACCGCATCGGGTTCTCGTGACAAGGCGAGGACTGCCGTGAAGAGAACCCGAGCTGCTCCTAAGAACAATGATCACTCGGCAGCAATCATCACAGTTACTTCTGATGCTGATGACGAGATTGTTGACGCAAAGCCTATAGCATCAGTGTCTGCTGAAGCATGGAATGCTTCTACTTCAAAGAAATCTCACTCAAGGCTAGACAATATTATAATGGAGGCTATAAAGAACTTGAATGAGCCTACAGGGTCACACAGAACTACTATTGCTAATTACATTGAGGAGCAATATTGGCCACCTAGTGATTTTGATCACTTATTATCCGCAAAACTGAAAGACTTGGCCTCCAGTGGGAAATTGATAAAGGTGAATCGGAAGTACAGGATAGCACCTAGTTCACCACGCTTAGAGGGCCGAAGCCCCAAGATGCTGCTGCTGGAAGATGTGCAAAAGGAGCCCCTGAAAGTAATGAATGATGCTAGTAAAAGCCTTACAAGATCTCAAGTTGATGCTGAATTGGCTCGCATGGCAACTATGACCCCGGAGGCAGCTGCGGCGGCTGCTGCTCGTGCAGTTGCAGAGGCAGAGGCTATCATGGCAGAAGCTGAAGCAGCTGTGAGAGAGGCAGAGGTTGCGGAAGCAGAGGCCCAAGCTGCCCAGGCCTTTGCTGAAGCAGCACTTTTGACATTGAAGAACAGAAATGCTGCAAAATTGATGGCCCAAGGTTGATGCTACTCGGAGCTTTTCCTGTCCAGCGTTGCCGCAGTGC 3 0 3' arm Panicum_virgatum mirnest 100 100 -37.3 .......((((((((..(((((.(((((...((..((((....))))..))......))))).)))))..)))))))).......... (-37.3)