mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCCGCAGCCGCTGCCGTG CGGCTGCAGCTAGCGGGCAGCCA ATCAAGGCCACGGCTGCAGCTAGCGGGCAGCCAGCAGCCATACAAGGCACTGGTCCTCGTTCTAAGCGCCCCGGCCGCGAACCCTATTCCTTGTTCTTGAATCTCTCATCCCCAATCCTACACACCAGCTGAGAGAGGAGAGAGAATTAATTCGGGAGATCTAGAGAGAGAGAACGGGAGGAGCGAGGTGCGCGCGTGGAAGGGGGGAGAATAGAATGTTCCCTTCCAAGAAGGCCACTAGCGTCGCTGCCGCAGCCGCTGCCGTGAGCTCAAAT ATCAAGGCCACGGCTGCAGCTAGCGGGCAGCCAGCAGCCATACAAGGCACTGGTCCTCGTTCTAAGCGCCCCGGCCGCGAACCCTATTCCTTGTTCTTGAATCTCTCATCCCCAATCCTACACACCAGCTGAGAGAGGAGAGAGAATTAATTCGGGAGATCTAGAGAGAGAGAACGGGAGGAGCGAGGTGCGCGCGTGGAAGGGGGGAGAATAGAATGTTCCCTTCCAAGAAGGCCACTAGCGTCGCTGCCGCAGCCGCTGCCGTGAGCTCAAATGATAGGCCGGTGTGCGTGCAGGGAGACTCGGGGGCGGGGCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGGTGGACGGTCGAGCTCCATGAGCGCTTCGTCGACGCCGTCACGCAGCTCGGCGGCCCGGACAAGGCGACTCCAAAGACTATCATGAGGGTCATGGGAGTGAAGGGACTTACTCTCTACCACCTCAAGAGCCACCTCCAGAAATTTAGGTTAGGGAAGCAGCCGCACAAGGAGTTCAACGATCACTCAGTTAAGGATGCTGCGGCAATGGAGATGCAACGAAACGCCGCCTCTTCTTCAGGCATAATGGGAAGAAGCATGAATGACCGCAGCGTGCACATGAATGAGGCTATCAGAATGCAAATGGAAGTCCAGAGAAGCTACATGAGCAACTAGAGGTGCAAAAGCACCTCCAGATGAGATTGAAGCCCAGGGGAAGTACATGCAGTCCATCCTGGAGAAGCTACCAGACCCTCGCCTCCGCGACGTCACGCGT 2 2 3' arm Panicum_virgatum mirnest 100 ath-MIR404 0.0009 -95.8 .....(((((((((.((.(((.((((.((((..((.(((......)))..(((((.((.(((((.((((.((...(((........(((((.((((((...(((((.((((((..((((................))))..(((......)))))).)))..)))))..)))))))))))..))).)).))))...)))))((((((.((((.....))))))))))..)).)))))...))...))))))))))).)).)))))).)))..... (-95.8)