mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCTCAGTTGTGAAGTCAAT TGGCGACCACAGTGGGAGATT CTGGCGACCACAGTGGGAGATTAATCTCTCAGTTGTGAAGTCAATTTCTTCAATA GCAGCGTGCAACGCGCCATTACAAGAACGTGTCAGGAGGCATGGACGGTTAACGGTGATGGAACAAATGGGCAAAGATGTGAGTCACGTGATCGTGTAACAATCACCACTTCTACACGACCCCACTACTCCATCACTTCACTTCCTCCACTTCCTACGAGATGAGGGTTGCGCTCAATGACTTGTATAAATAGGTCCTTCACCTATTTTCCAAACAACACGAAAAAGAGACAAGCACAGAAAACTAAGTGTTGTCATTCATATCCAGAAAACACCAGAACTGATAGCTTACATTTTACAAGCCAGTTCAGCTTTCTGATACAAGTCATAAACAGCCAACATCTTCACAATCTCAACACCTTCTTCCCTTCCCTCCCTAAGATCAACCCCATCTCCTTCACTTTGTGACCGAAGCAAATCTGGAACGACCATTTCTTAGTTTAGGCCAGAATTGTATAGATTGATCTCTCGAATCAAAAGCACTCCCACGCAGTGCATTTGTTTAGGATTTAGATTCATTTCTCATCCACACACACCCAAAGTTACCAAAAACAGCATAAATAATTTTCACCCATAAACAACTGGCGACCACAGTGGGAGATTAATCTCTCAGTTGTGAAGTCAATTTCTTCAATACCCAATCCCATTTGGTTGATTTCAAAATGGTTGGTCTTATGACTCCCCTAACAACTCCAAATCCTGGTCGAAGTTCCTCCAATGGAGATACCCCTCTTCAAACGGTGTATCTGATGGTGTAGCCGGAAGAATCCAAACATTGGTCGAGTTAGCACGGGTGCAGGAGATTCACACGAAGAACATGAAACTGATCAAAGAAGCGATAAACGACATACTCGATCTCCTTGTCAAGATGACATCAGAGATGAGGGTTCTATCACGGAGACTTCTACACTGGAGACTGATTCCCCTCAAATCAACAGTTTCACTATGAACCGGAGCCAGTGGATCAGGAAGAGGCTTTATCTAGTGAAAGTTGGGTGAATTTTAACACCTCTCGGATATCAGGGGCGGAGACGTTTATTGCGAATAACCAGGATAGCCATGGACATGCTTCTACCTCTTTCCGGTCCAGAAGTTCAAAACATCGAAGTTTTATAATAATGTTAATTAACGAGAAGACTTGATGGCGGAGGAGGTTCCAACGACTAAACATTAACGCACGCCCTCAGGATTCAATTCTGAGAGGGCCTCTTTCGACACAAGGGCTATCTTCTC 4 2 3' arm Papaver_somniferum mirnest 100 100 -15.4 .((((...((((((((((((....))))))).)))))..))))............ (-15.4)