mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCAAACCCGAACCTGAACCTG GGTTCAGGTTCAGGTTCAGGT GGTTTAGCCCCAGGTTCAGGTTCAGGTTCAGGTTCGTTCAAAGAGCCCAAACCCGAACCTGAACCTGAGAAAGTTC CGCTGCTGATACTGAAATGAACGGGCCTTCGGAAAGCGTAGACAATGGCGATGATAAGTCGTATCAGAAAAGGAAACAGAAGAGTGTGGCGGAGTTGATGAAAGAGGATGAACCTAAAGACAAGAAAGCGAAAACCGCCAATGATGGAGGTGGTTCTAGTAAGAGAAAAAGGAAGGCGTTGGTTGTGTCGGTAACACCCGAAAGTGACCATGAAAATGATGGTGGCGGTGTTGAAGAAGAAACGATGTCGCCACGCCAAAGGAAGAAGAGCAAGTATCTCTCACCGCCTTACTTAAGCCCTGTCGTGGGCGGGAGACTTTCTGTTTTTGGTTCAGGTTTAGCCCCAGGTTCAGGTTCAGGTTCAGGTTCGTTCAAAGAGCCCAAACCCGAACCTGAACCTGAGAAAGTTCCGGAAATGGCTGCTAAACATCTTGAGGACTCGTTGAAGAAGAGCAGCGGGAAGAAAACCCGTCAAAGCAGAGGTGTGCATGAAGGTTCTGATCCTCAAGAAGAACCGAAGAACACGATTGGTGCTGCTGCTGTGAATGTGAAAAAAGTGTTCCACGGGCTGCTGCGTGTAGCTCTCGATCCTACATCTTTTACGGAGAAAAACCTCCCTGCGGTTACTGATTTCATTTCATCCTACCGGAGCGCTATCTTTTAAGAAGGTTCCAGCGATCAGACTGACCAAAAGAAA 3 0 3' arm Parthenium_argentatum mirnest 100 100 -33.8 (((...))).(((((((((((((.((((..(((((.......)))))..)))).)))))))))))))......... (-33.8)