mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCGGCGGCGGAGAAGCTCCGG CGGCGTCTCCGCCGCCGCTT TCAAGACAAGCTCGGCGTCTCCGCCGCCGCTTTCGCTCCAGTCGCCACACCTGCCGCTCCTGGCGCCGGCGGCGGAGAAGCTCCGGCTGTTGTAG TACAAAAAGCAGGCTGGTACCGGTCCGGAATCCCGGGATATCGTCGACCCACGCGTCCGGAGAGATAAAAATGGCGGCAACAACATCAGCCTTATCAGCACCAACACCACTTACACGTCCACCACGCCCTCTTTCCTCTTCCACTCCCAAAACTTTCCTCAAATTCCCATCGTACCCTTCCTTCTCCACCTCAATCTCCCACCGCGCCACTCACCTCCGTCCACTCGCCGCCGTCGAAGCACCAGAGAAAATCGCAGACCTCGGCGCAAAGATCTCCTCCCTCACACTCGAAGAAGCTCGTTCCCTCGTCGATTACCTTCAAGACAAGCTCGGCGTCTCCGCCGCCGCTTTCGCTCCAGTCGCCACACCTGCCGCTCCTGGCGCCGGCGGCGGAGAAGCTCCGGCTGTTGTAGAGGAGAAAACAGAGTTCGATGTCGTCATCGATGATGTCCCTAGCAATGCGAGGATTGCGGTGATTAAATCCGTTAGGGCTTTGACTAGCTTGGCGTTGAAGGAAGCTAAGGAGCTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGTGTGTCGATGGAAGAAGCTGAGAATGCGAAGAAACAGCTTGAAGAAGCTGGAGCTAAGGT 3 1 3' arm Paullinia_cupana_var._sorbilis mirnest 100 100 -41.1 ....((((.(((.(((.((((((((((((....((((..(((.((.......)).)))...)))).)))))))))))).)))..))))))).... (-41.1)