mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA ATGAAGAGTGGCAATGAAG GAGTAATCTGTACATGCCTCAACTATCTTAATCATCATCATCATCATCATCAACATCATCATCATCATGGTTATAATAAGTGTAGTTTCCATGGTTCTATCCTTCCTAGTCACAAACTGGTGACGAAGATGATGAAGATGAAGAGTGGCAATGAAGAGGTACTTAGGAGGGCCTTGTG AAACCACTCATACCTCCGAGACCAAGACACCACCGCCGGTCCGACTATTCGGATCGGGCACATACCGGAAAACCCTTTTATGATCTACACCCAAAACAACACCATTCAAAACCTGGAGTAATCTGTACATGCCTCAACTATCTTAATCATCATCATCATCATCATCAACATCATCATCATCATGGTTATAATAAGTGTAGTTTCCATGGTTCTATCCTTCCTAGTCACAAACTGGTGACGAAGATGATGAAGATGAAGAGTGGCAATGAAGAGGTACTTAGGAGGGCCTTGTGGCGGTCCAATCGGCGGTTGACTCTCCGGTGGTGCAATTTCCGGCCAACTCCTAGTCGGCTCTCGGTTATGTCAACTACTTAATCTGTCAAGTTTGTTTAATAACTTTAATTGATTTTCTTTTTT 4 2 5' arm Paullinia_cupana_var._sorbilis mirnest 100 100 -40.7 ((....))..((((.((((...(((.(((..((((..((((..((.(((((....((((((((.((((((..((.((....)).))..)))))).....((.((.(((((.....))))).)).)).)))))))).))))).))))))..))))..)))....)))..))))..)))) (-40.7)