mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCTCAAAATA TTCTTAGACGGAGAGAGTAGT CCTTTTGATCTACTCCCTCCGTCTCAAAATAGATGTCTCAAATTTGTCAAAATTTGGATGAATCTAGACACTATTTAGTATATAGATTTATCCAAGATTTGAAAAATCTATGACATCTATTCTTAGACGGAGAGAGTAGTAGATATT GGGCGTTCTGCAGCACGGAGTGCAGATACCAGGCCATCGTGCGCGACGAGTTCCAAGAAGAGAAGGAGCGCAAGCGCCGCGCCGTGCCGTTGGACGCCCCAAAGGAGGCGCTCGCGGCGGACTCCTGCGCCGACAGCGGGCGGATCTTCTTCACCGGCATCGGAGTCGCCTGAGCCTGAACCGCGAACTCCAGAGGACTAGATGTCTAGATGCCTCGCAGGCAACTATAGGCACCGGCAACCAGCCACCTGCCACGGGCATAACCTAGCAAAAAAAAAGAAGAAAGGGGGGAAAAAGGAACGATAGCAGGTAATTGTAGAGAGATCAGGGAATTTTGTTTTCTCCTCTTGCAAGAGAGGCATGAATTTTGGCCTTTTGATCTACTCCCTCCGTCTCAAAATAGATGTCTCAAATTTGTCAAAATTTGGATGAATCTAGACACTATTTAGTATATAGATTTATCCAAGATTTGAAAAATCTATGACATCTATTCTTAGACGGAGAGAGTAGTAGATATTTTGTATACGTATTAATTATTTTTCATGGAGGTTTGATGTTTTTG 4 0 5' arm Avena_barbata mirnest MIR1122 6e-16 100 -56.3 ....((...((((((.((((((((...((((((((((....((((.(((((.((((((((((((((...(((....)))...)))))))))))))).))))).))))....))))))))))...)))))))).))))))..)).... (-56.3)