mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGAGAAGTGAGATCAAACC GCTGTTTTTGCTTACTCTCATC ACAAATAGAGTGGAGAGAAGTGAGATCAAACCTGGAGACCATATCTATACTTACAGAGCTGTTTTTGCTTACTCTCATCATGGTATT TGTGTCTATTTGTTTGATTTATCAAATGTATGTAATGAGTCTACCCAAGAATTCATAAAGATTGTGACTTTATACAAAGTACATTGTATTCAAAAGGGAAAATAGAAGATGGGGTTGTTGACAAATAGAGTGGAGAGAAGTGAGATCAAACCTGGAGACCATATCTATACTTACAGAGCTGTTTTTGCTTACTCTCATCATGGTATTTTTGTTGGTGGAAGCAAGGTGGTCCATTTTACCCGTGTCAAGGCCCCTGCAGATGCTGCTGATGAAATATCAGACCTTGCTTCTTCATGTCCTACCTTTCCTGACTGTGGATTTAGGCTACCTAACAGTGGTGTCGTTCTTTCATGTCTGGATTGTTTTCTTCGCAATGGTTCACTCTACAGCTTTGAATACTGTGTAAGTCCATCTGTTTTCCTTACCAAAGTGCGAGGGGGCACTTGTACTACTGCAGTTTCAGACCCTACTGAGATGGTCATACACCGAGCAATGTATCTTCTTCAAAATGGATTTGGGAACTATGATGTGTTCCAGAACAATTGTGAGGACTTTGCGCTGTACTGCAAAACAGGTCTTCTGACAGTTGATAGACTTTGTGTTGGAAGTAGTGGACAGCCTCTTCTGTCGTTGGTGCTCCTTTAGCTG 5 1 5' arm Petunia_axillaris_subsp._axillaris mirnest 100 100 -16.3 .......((...(((((((((((((.((...(((.(((.....))).......)))...)).)))))))).))))).))........ (-16.3)