mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTCTTCCTCTTCCTCTTTCT GAAGAGGAAGAAGAAGAAGAA CTCCTTTTCAGGCTCTTCCTCTTCCTCTTTCTTTTCTTCCTCCTCTTCATCCTCTTCTGGAGGATCTGCAGGCATTGGAGGCGGCAAAGGTGCCTTCATAGGACTAAATTGAGGGAATATATCTGGTCTTCGTCCAGGCTTAGGCCTTTCCCACTCGATTGGGAAATCGAGAGGGGAACGGCGAGTCATCTTTTCCTCATCGGGAGCCATGCGTACGAGGTGCCTCCGAAGGCGTGGAAGTGGAGTGAGAGCGCGAAAGCCAACGATGAAAGGTGATGCAAAGTGAGAAGAAGAAGAAAGCGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGAAGG GGATTAAGGAAATACTGCCTAAAAATATATGCGTAGCACAAAACTGTTGTTTCTTATTTTTGGGTGTTGAAAGCACTTGCATGAGCTAACTCATATAAGGAATGACAGCTAGAAATACTTGAAAAAAGCTAAAATATCTGATGCTATAGGTACTCATGTGATACCCTTACATATCAAGGATAATTGCATGAGCTAACTCATAAGGGCACATGACTAGTTATTTACTACACTCTACTCTATAGCTTCTCTGGTTTTTCTGGCTTTTCTGGCTTTTCTGGCTCCTCCTTTTCAGGCTCTTCCTCTTCCTCTTTCTTTTCTTCCTCCTCTTCATCCTCTTCTGGAGGATCTGCAGGCATTGGAGGCGGCAAAGGTGCCTTCATAGGACTAAATTGAGGGAATATATCTGGTCTTCGTCCAGGCTTAGGCCTTTCCCACTCGATTGGGAAATCGAGAGGGGAACGGCGAGTCATCTTTTCCTCATCGGGAGCCATGCGTACGAGGTGCCTCCGAAGGCGTGGAAGTGGAGTGAGAGCGCGAAAGCCAACGATGAAAGGTGATGCAAAGTGAGAAGAAGAAGAAAGCGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGATGAAGGCGGTGTGAGAAGCGTGTTGAGGCTCACCAAAGCCATGGCTGCGGCTGCGCAACACCTAATCCAATCCAAATGGCG 4 0 5' arm Phaseolus_acutifolius mirnest 100 100 -112.5 .((.(((((....(((((.(((((((((((.((((((((.((.(((((.((.((((((........(((.(((.(((((((.(((..(((((((((((...........))))))....))))).))).)).))))))))...(((.(((((.(((((((....)))))))..))))).)))..((((((((....((((((...((..(((((.((...(((.((((......)))).)))...))...)))))...))...)))))))))))))))))........)))))).))....))))).)).)))))))).))))))))))).))))).))))).))... (-112.5)