mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGCCATTGTTGTTGGTGGGG TCACAACGCAGAGAAGGTTAGG GAACAGGTGAAGGAGTTGACGAAGGAAGCAGAAGCCATTGTTGTTGGTGGGGGAAACCTCACAACGCAGAGAAGGTTAGGAATTAGAGAACGACGACGTTTGATGAGT AACAATTTCACCAATTATTTTTTATAAGCGATGCGAATACATAAAAAAAAGAGCAATACAAATAATTCCTACTACATCTGATGTTTTATCCCAAAGAAGAAAATAAACTCTTACTCATTCAAGGGTCATTATTATGGGCTGTAAAAGTCAAATCAACGACCTGTATACAGTTATCTAATTTCGTAAGAGTCAAAAATGAGAAACACGGACATAGTACGAAATTGTCATACAATACTCGAGGAAAATGTGTAAGAAACATTAATAAGCAAAGTCGATTCATGGCTCAGGTTGCATTTTCTCACATTCTTCCCGAATTGACTGGAAAAGAACAGTAGACAAATATCTTTCACCAAAGCTTGGGAAGACAACCCCAATAAGCTTTCCTGCATTTTCAGGCCTCTTTGCAACCTTCAATGCAGCTGCAGCAGCAGCTCCAGAAGAAATTCCCACCAGCAAGCCTTCCTGGAGTGCTAATTGTTTTGCAGTTTCAACTGATTCATCACTTGAAATCGCTATAACTTCATCAAGCACATCTTGATCCAAATTCCCGGGCACAAAACCAGCTCCAATACCCTGAATTTTGTGAGGTCCTGGCTTTCCGCCTGAAAGTATGTTGCTTTCCAGAGGCTCTACACCAATAACCTGTATTTTTGGGTTTTGTTGTTTTAAGTATTGGCCAGCTCCAGAAACAGTTCCGCCAGTTCCAATTCCTGCAACTAAAATATCTATCTTTCCCCTTGTATCTTCCCATATCTCTGGACCAGTTGTCTCAAAATGAACCTTAGGATTTGAAGGATTATCAAATTGTTGAAGCATGTATGCATTGGGGGTATTTTTCAAAATTTCTTCAGCCTTTTGAACTGCACCATTCATGCCCTTCGCTGCATCAGTCAAAACAAGCTCAGCCCCAAATGCTTTCAAAAGAACTCGTCTTTCTAAACTCATTGAAGCAGGCATTGTCAAAATGAGTTTATATCCTCTTGAAGCTGCTATAAAGGCAAGACCAATTCCAGTGTTCCCACTGGTAGGTTCCACCAATATACTCTTCCCAGGTGTTATAGCTCCTCGCTGCTCAGCATCATTTATCATGCTAAAACCAATCCTGTCTTTGACACTACAACACGGTTCCATAATCTCAAGCTTTGCAGCAATATTGGCCACAGAACCCTTCGTGATATTGTTTAGGTAAACCATTGGCGTTTTCCCTATGAGCTGGGTAACATCCTCAGCAATGTTGAGACCCTCAATTTCGGTTTGGGGCCTAACGGAGACAGCTTTGCAGAAAACGGGGGAAGGCGACGAGATCCTCGTGACGAGTGGTCTCGAACAGCGGCCGTTGGCGGGCCTGAGTGACGTGGCGGTGGAGACGGTGGTGAAAGAGTGGAGAGTGGGAGCACGCGAAGAACAGGTGAAGGAGTTGACGAAGGAAGCAGAAGCCATTGTTGTTGGTGGGGGAAACCTCACAACGCAGAGAAGGTTAGGAATTAGAGAACGACGACGTTTGATGAGTTGAGCTGAAACTGATTTGTCGAAACCAAAATGGCGAGTTACTGCAGAATCGCACGAACTCACTTCACAGTATCCTTTTGTAGTTGCT 5 1 5' arm Phaseolus_acutifolius mirnest 100 100 -23.9 ..............(((.........)))...((((.((.((((..((((((....))))))...)))).)).)))).....(((..(((((....)))))..))).. (-23.9)