mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA ATGTGATGACATGGATTAAA CATCACCTTCTTCATCATCATCATCATCATCATCTTATCTCTCTCAGAGGTTTGGAGAACACTACTCGTTCTCTACGTACAATACAGCCATGATGTGATGACATGGATTAAATAAA GTCCGGAATTCCCGGGATGGAAAATATCAAGTACTAGTGACTAGTAGTGTACTGAGATAGTGAAAAAGAGAAGCAAATGGCGTCCTTGTTCTTCATGGAGATGGTACGGAGCGCACCACGCACGGCAAGGGCTCCGTTCTCCGCCGTGGCACCATCACGCTTGGTCTTGAACACGCGACGCAATGACCGTGCCACCCTTGACACAATCCATGAAGAAGATGCTTTTGATTCCAATCAAAATCATCTCAAACAATCATCTTCATCATCACCTTCTTCTTCTTCATCATCATCATCACCTTCTTCATCATCATCATCATCATCATCTTATCTCTCTCAGAGGTTTGGAGAACACTACTCGTTCTCTACGTACAATACAGCCATGATGTGATGACATGGATTAAATAAACAAGAGCATGTATAATGATCATGTAAATGTTTTAGTTTCTGTGATCATGCTTCCTTGTATTATTATATTGTCTTTGTGTTTTAGCTTAAAATGTATGAATCCTATGTTTGTTAAACTANAAAAGTTAATTNNTYGTYGNTYTAGNACTARAAAAAAAACGTTATTAAATCGCGATCTAAGAACTAGTC 5 1 5' arm Phaseolus_acutifolius mirnest 100 100 -23.4 ..........((.(((....((((((.((((((...((((((...)))))).((((((((.......)))))))).(((...)))....))))))))))))....))).))..... (-23.4)