mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCAGCTGCAGCATCTTCAGA CAGAGATGTTTGCATTGTTGG TCAATGGCGCCAGCAGCTGCAGCATCTTCAGATGATATAAAACCCAGAGATGTTTGCATTGTTGGTGTTGCGC GGCTCTTCTTCACTCCTCTTTCGTCTTCTCTCACTCTTTCTTCTTCACGAACAACACATCGCAGTCAAAGATTTTATTTTCATCAATCAATGGCGCCAGCAGCTGCAGCATCTTCAGATGATATAAAACCCAGAGATGTTTGCATTGTTGGTGTTGCGCGTACCCCGATGGGGGGATTTCTTGGTACTCTGTCATCTCTGTCTGCCACCAAACTAGGCTCTATAGCTATTGAAGCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAGGAAGTAATTTTTGGGAATGTTCTTAGTGCTAATTTGGGGCAGGCTCCTGCAAGACAAGCTGCTCTCGGAGCAGGAATACCCAATTCAGTGGTCTGCACTACT 4 2 5' arm Phaseolus_coccineus mirnest 100 100 -22.4 .....(((((((((((.(((((((((((..................)))))).)))))))))))))))).... (-22.4)