mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCATTTTTGAAATAGACAAC ATTTTATTTCAAAACTGAATT TTATTCGGATATTCATTTTTGAAATAGACAACAAGAAACTACTACTACTGTTTCTCCTTCGATATTTTATTTCAAAACTGAATTCAAACCAT TTTTTTATTATAATGGTGTAGCTATTATTTGAGTCTAACTATCCCAGGGACATAAAATTGGCATTACATTGAAGTAAAACAAAAGGAGATGACGAGCATGAGCACTTAAAAGTGCTTGATTTGAGAGGCGCTATCAAAAATTCCCTCACAAAATTATACAACAGTAGTATTATTCGGATATTCATTTTTGAAATAGACAACAAGAAACTACTACTACTGTTTCTCCTTCGATATTTTATTTCAAAACTGAATTCAAACCATCTCTATATCTTTATAGCTATCTATATATAAGTTCTTATTCACTGCAATTAACAGCATTAATTGAACTAGGGCATAATGGTCATCAATCAGAAAGGCCTCTACCCAATGATATTCCCCCGGGGAGAATAGTTGCAGACAACCAGAGTGATATTACCCTTATCACAGCTCACCTCGGCACACCCAAGCTTAGTACTCGTTTTCCACACCAATTGCGTGTAAACTCCACATGGCTCATCAGAATCACAGGAATTCGTATTGTAATTGTAGAACTTCTTCTGGGCGGTCCAAGCTTGAACAGCTTGGGCCGGAGTCATGCTACTCGACTCTCCCCAGCACAGATTCTCCCCGTACACTTTGGTCTCCGAATGCACCATCTCACAGTGGTGTTGGTCCCTCTGAACCCTGCCATATTTGCTGGCGAAAGAAGCAACTTCGGCGTCCCAGCGCAGAGGAGGGACTCCCACCAACGCTCTCTCCTTGTTATGGGCACGCAAAAACTCCACTGCAAAAATACTTTCGCTACTGTTTCCGACATTGGTATTTTCTGCTGATGCAAATGCTAACACCAAAATCATACATAATATAGAGCTGATTCCTTTCATCTCTGATTCAAAATGAAAAGAAGCCACCCAAATTTTTTGGCTACTTGTAAGAAAATCCCTACCATCTACTGATAGACTAACAAACAACTGTTAA 5 0 5' arm Picea_glauca mirnest 100 100 -16.5 ......((..(((((.((((((((((((.....((((((..........))))))..........)))))))))))).))))).....)).. (-16.5)