mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGCAGCAGCAGAAGCAGCAG GTCGTTTCTACTTGTACAG ATAAGTCTGTCTGTCGTTTCTACTTGTACAGTAAGGTTACTTGTCCTGTGGTGCAGCAGCAGAAGCAGCAGTAGCGAAGT TCGAGTTTTTTTTTTTTTTTTTTTTGATGTGGAAAGAGCAATATATTGAAAATGCAGCGATTCGGGAATATACAACATAAGTTGGCCAAGGCCAAACAATCTGTAGCACTGCCAGTCTAATGGTTCCAAATTTATTTACTATAACAATGGACCAGGCTACCCTGCAAAATAGTTTTCGCAGTTCCATGCTTTCCCAAGTCATCCTTACTCTACTGTTCATGAGCAAGGGGAATCAATCACAAAACATACAAGTTTCTTTTCCATAGGTATATTCATAAGCCATAAGTCTGTCTGTCGTTTCTACTTGTACAGTAAGGTTACTTGTCCTGTGGTGCAGCAGCAGAAGCAGCAGTAGCGAAGTTACTAAGGCCCAACTTAAACATGTCAAGATTTACTCCCTTGTCTACCGGCACACTTGTAACTCCCATCTTTGATACCGATTCAATATTTCTGTCCTCATCATCAAAGAAGAGCATAGACTTGTATGGAACCCCAGTTTTTCTCTGGATCTTTTGGAAATGCTCCGTCTTGTGAGTCCAGCTGGAGTATATTTCCTGTGCGACGAACATGGGCTGGAGCTCCAGCTTGTCAATAAAAACCCTTGCGATGTCNGAGGTGGGGGAGCGAGAGGCAATCGCCGGACCACGCACTTGCAGCTACACGCGGTGCCTCTGGTGGCGTCGGCGAGGCGAAGGCTTTGGGGTTGCCAGACCTGCCGCTTGTGGGAACCGCTACCGGTACCAGTACGATTACCGGCCCGCTGGTGGTGATTCCTGGGATCCCTGCTATTGGTACCCACCCATGATCATCTCTAGTTTACAGCCTGAAGCTCACCTGCTTGTGGCTTTGGACTTCTAGTTCTAGCTAGCA 2 2 3' arm Avena_sativa mirnest 100 100 -17.9 ....(.(((.((((.((((((.(((((((....(((........)))...)))))..)).)))))).))))))))..... (-17.9)