mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTTCCAACGCCTCCCATGCC CTTTGGAGGATTTGGAAAGGC TCGCGGGGTTTCACAGGGACGCTGTGCACTTTGGTCTTTAGGCTTTGGAGGATTTGGAAAGGCATAGTCATTATTTTTACCGAGGATCATCGATTTTCTCTGATCCTTTCCAACGCCTCCCATGCCTATAGTCCTCATTGCACATCCCTGTTATTCCCACCCGCT CGGCCGGGGGACAATGAAAGAGGAGCAGGAGCGGGAGGAGGAGGCAACGGGCTGTTGTCGCGGGGTTTCACAGGGACGCTGTGCACTTTGGTCTTTAGGCTTTGGAGGATTTGGAAAGGCATAGTCATTATTTTTACCGAGGATCATCGATTTTCTCTGATCCTTTCCAACGCCTCCCATGCCTATAGTCCTCATTGCACATCCCTGTTATTCCCACCCGCTGTCATGAACTCCACCAGAGTTGATCTTTCAATCGATTTTATTCAAGGTTGGCATTCCCATGTTTAATGACTTGGTGTACGTCCACTACAATCTCCGGCTTTGGATGAGGTATATAGAGAAAGAGCCAGACGTGGATGCCATTTCTTTGGACAATATTGATATATTGTCTAAGTGGAGGGTGGAGGTTGAGGTGCCTCTCTTGGATGAGGCATTTGCATGGTTAGATGAAGGAGACCAAAAGCATCAACAAGAGAAGGAGCTTCATCCATCACCATGGAGGATGATGAGCTAGTTGAAAGTGGAACACCGCTTTCTACATAGATTGGAGTAGCTAGTCCTCCAACCACCATTGATGCACGACAAAGACCTTCTGCCTCTAGTTCAAGACCTGACAAACAACCCTGATTGTTTCTCATAAAAGGGGGAGAGGGCATTGATAATTTGATATCATATAGCTTGTTGCTAGTTTTGGAACATATACATTTATATATGTGATCGTTGATGTCATTTTGTATTGGTTTCAGACTTTCAATAATGACTTTGATGTATTGGTTTTTATTTGGCATCCACTATATCATATATATCAGTTCTTTCTCCAAAAAA 5 0 3' arm Picea_glauca mirnest 100 100 -59.2 ..(((((.....(((((((...((((((....((.((.(((((...(((((..(((((((((..(((..............(((((((...))))))).)))..)))))))))..)))))...))))).)).))....)))))))))))))........))))). (-59.2)