mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATCAAGAAAGCCGTGGGAAAT TTTCCACGGCTTTCTTGAACT CGTCATAGTTTTCCACGGCTTTCTTGAACTTACTTCACGATCAGGTCTGTTGGCGGCCGATCGCATCGATAACAGATCCGGGTGACAAGATCAAGAAAGCCGTGGGAAATTATAGA ATGGACAAGCGATAATTTCGCGATTATATGGAGTCAGATATGGTGATAATAATGGCGATAAGACGGCAGGAAGGAGCATTAAGGACCGCAGAAGTTGTAGATATACAATCGATGGCTCTGCTCTCCATAAGGAAAAAGATAGAATTCTTCAGTCCTACCCCTACTGCTGCAATGATTTAAATCCAACGCCGAGGATGTCTTTTCGGGCGCAGATGAAGAAGGGAAAGCTTTCGGCTATGTTGCGAGCGTTGGATACGGGGCCATTGCAGTGACCAAGTTATTATCACTATTTAGTACCGGAGAATGCCGTCATAGTTTTCCACGGCTTTCTTGAACTTACTTCACGATCAGGTCTGTTGGCGGCCGATCGCATCGATAACAGATCCGGGTGACAAGATCAAGAAAGCCGTGGGAAATTATAGAGGGATTCAATAATATTGCTTCTGCTGTGACTGGACTTTGTAGTTATCTATCCAGATCCATAACATAACCCTAGTCTAGGTAAACGAATGAGGTGTCGGCTTCTCTGACTGGTAAGTAATCTGGGGGTCTTTCATTATTGGCTGCTGTGATTGATGTGTTGTTGATATCGAAAGTTTTGAATGAAAGATGATTTCTTCGATCTCGAAAAAA 1 0 3' arm Picea_glauca mirnest MIR396 0.0001 pab-MIR396b 3e-60 -49.3 ....(((((((((((((((((((((((.(((...((((..((.(((((((((...((.....)).....))))))))).)))))).))).)))))))))))))))))))))))... (-49.3)