mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAAGATCATCCCTCATGCTGT AGCATGATTATGATATTGGA AGGGTCAAATGGAGCATGATTATGATATTGGATCTACCATAAGGGACAAGATCATCCCTCATGCTGTTTCCTGGTT AAGAACTCTGTCCTTACAAAAGTCTATCATATGATTGATGAAGATGATCCGATTTTGGAGAAAGCAATTGGGACTGAAATTGATTGGTATCCTGGGAAGAACGTGACACAGAAGATTCTGAAAAAGAAACCCAAGAAAGGTTCAAAGAATGCGAAGCCTATCACTAAAACTGAACAATGCGATAGCTTCTTCAACTTTTTCAACCCCCCACAAGTACCTGAAGATGAGGAGGATATTGATGAAGATGCTGCTGATGAGCTTCAGGGTCAAATGGAGCATGATTATGATATTGGATCTACCATAAGGGACAAGATCATCCCTCATGCTGTTTCCTGGTTTACTGGTGAGGCTGTGCAAGCTGAAGATTTTGAGGATATGGAAGGTGATGATGATGATGAGGAAGAAGACGAGGATGATGACGAGGATGATGACGAGGAAGAAGACGAGGATGAGGATGATGACGATGATGAAGAACTAAGCAAACCCACGAAGAAGGCTGGCAAACCTAAGGGAGCTGCAAAGGTTGGTGCACAAGGAGAACAGCCAACAGAGTGCAAGCAGCAGTAGAACTTGTCTCCACTGGGTCGATGCAGTATTTTCAATTGAACTGCTCAGGGTGTCATTTGCTGGTTGTGTTGTGCACGGGTGAGATTTTATTGTGGATACATCTTAGGCATGGCTATATCGAG 5 1 3' arm Avena_sativa mirnest 100 100 -18.8 .(((..((((..(((((((..(((((.(((..(((......)))..))).)))))...)))))))))))))).... (-18.8)