mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCCTCCC GAGGAGGAAGGGAAAAGAAG TGCATGGGAAGCCAACGCTTGCCTCTTCCTCTTCCTCCTCCCCGCCCAGCTCCAGGACACCGAGCACGAGGAGGAAGGGAAAAGAAGGATAATGGCTTTTGTGTA ATGGGCAAAGGACCATCTAGGGGAAGGTTCGAATCTCTCCGTTACAAAGAGGTTTCTCTACATTTGTTCGAGAATATTAAATATAAGGAATCTGTTTTCAAAGGCGGCCCTTGGTTTTTCTAGAATCCAGGGTTGTTTCTTAGGCCATGGTAGGATTCTTTTAATTTGAGCTGGACTTCGAAAGATAAGCTTTATATCTGGGGCAGGCTACCTAGTTTTTTGCTTCATGACTGTAATGTGAAGGTTCTGATAGCTATTACGGATAGGCTGGATATTTTTCAATACCCTGCTCTCAAAACCTAGCCCGCTAAGGTGTGCCAAGGAAATTGGTAAGGATGTCTAGGGTGGATATACAGCGGAAGTGGAAGAAGAATAGGACCATCGGTCTCGAAGAGAAGGAGAAGTAGCGACAATTTTCGATTCAGGCAAAAGCAAAGGAGGGTGGGGCAGATCGGAGCTTAGTTGAGATGATGGCAGCCAAGCTCCTCTTTTAGTGTCGTAAGCGGGGGGCAAGTATCAACAGGATGGGTATTGTGCAAGAGAAGATAGCGGTAATCCGACCTGGGATCGACTCCCCAAAGGTGAATTTCATGGGGAACTATCCCAGTTGATGGCATAGGTGAAATAATTCCTAGCAGTAGCATGGGCAGATTACACTATGATGTTCCTAGTGTTATCCAAAGGCGTAGGAGAGGCTCATGGTTTGGATGGGGATCCACTCACTCTAGTCAAGCTATCCGAGGATTCTCAGTTCCCAGCCGCGTTTCTTCTTTTTCTTTGGGCAGTGCATGCAATAATCAGGTAAGTAAGCGCGTCTCTCTGCATGGGAAGCCAACGCTTGCCTCTTCCTCTTCCTCCTCCCCGCCCAGCTCCAGGACACCGAGCACGAGGAGGAAGGGAAAAGAAGGATAATGGCTTTTGTGTATTCCACTTGCCACCTTTCTGGGCC 4 1 5' arm Picea_glauca mirnest 100 100 -35.9 .((((((.((((((...(((..((.((((.((((((((((........((((.........))))..)))))))))))))).)).)))....)))))))))))). (-35.9)