mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTATCTGCACTTGCACCTC GGTGCAAGTCTAGAAAACA ACAAATCGAATTGCTTGGTGATATTTATTATAGGTGCAAGTCTAGAAAACATGTGAAGAGACTTCTGAACGGGACCTAGCCCTAATACCAAGCGTCCCTCTTCATTAGGCTTTGGTTTTATCTGCACTTGCACCTCACCATTAAATCCATTACTAGCATTCCACG ACCAGAGTACACTGATGCAACCCGTAACCATGTACATCGACTCTCAAAGGTTCTGAACCATTCTTCTCACCAAGTATTCCATTCCAGCCAACAGGAACAAGAGAGGTGGCCGTTCGAAGAGTAAGAGGTTCTGCTATGTGTCCTAGTTCTACAGCACCAGCCACAGCCAACCCTAACCATTGCTGCAAATGTGGCAAATTTGGAAGATGCTCCATACCCAGAATCGAAGCAGCATTGTTGCCCATGCAAAGGTCATATATCTTCTGAAATCGAGACCTGTATGATCTCATAGAATGTGACTGAAACCGCTCCTTTAATTCTGCAAGGACAGACTGTACCGATGTTAGTTTGGTATACTCTGATGCAGATAGTGGTTCAACCGATGACTTCTCCAATAAATAAAGCTCACCAAAAGGAACATAAGAAGGCAAAGAAGGCACCCTGTGCCAGCGTGTGGATTCTCCAGTATTAGTTTCTCTACTTTGAGTTCTTTGAGTGTTCCTCTTGACCATTGTTGACGTTTTATCTACATCAGAAAGAGCCACAAGGGATATTCCATCTACACTCTCCTGAATTTCAAGGGACTGTGGTGATGCTTCTCTTTCATCCATTGCCGAGGTCATAACAGAATTTCCCTCTGTAGAAGTTGCATCTGTATCTTTTTTCCTTCCTCCAAACAAATCGAATTGCTTGGTGATATTTATTATAGGTGCAAGTCTAGAAAACATGTGAAGAGACTTCTGAACGGGACCTAGCCCTAATACCAAGCGTCCCTCTTCATTAGGCTTTGGTTTTATCTGCACTTGCACCTCACCATTAAATCCATTACTAGCATTCCACGAAGAAGATTTGTATAAATATCCATCAGAAGAAACCTCTGATGCCTGTGCACGATAATGCTGAAAA 2 2 3' arm Picea_sitchensis mirnest 100 100 -40.6 .......((((.(((.(((((((((((....((((((((((.((((((((....((((...((..((((.(((((((.............)).)))))..))))..)).)))).))))..)))).))))))))))......)))))..))))))))))))).... (-40.6)