mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTCATCATCATCATCTTGT AAGATGATATCATGATGAACATA AAGGCTGGCAAGATGATATCATGATGAACATACATATTGGAACCACCCTCTTCAGTTTCTTCTTCATATATCCAGACCTCAAGATGGCTAACATCGTCTTCATTACGAGCTGATAAAATAATCAAGTCAAAAGGTTTAATTGTCATGTCTTCGATTTCATCTTCATCATCATCATCTTGTTCTACA TTTTTTTTTTTTTTTTCTTCAGTTTGGTCGTCTTACCAGATGCTTCATCTTTAACAGCACCACCCAGGACTACAGCAGGTTCAACCTCATCAAGTACATCAAGGTCCCAAAGCTCAATTTCAGGTTGCATTGTTCCAACAGCAACAAAATTTCCTTTTTCTCCACCTTTCAAATTACAATCGAGCCAAGCAAGAGAAAGTGGAAAGGCTGGCAAGATGATATCATGATGAACATACATATTGGAACCACCCTCTTCAGTTTCTTCTTCATATATCCAGACCTCAAGATGGCTAACATCGTCTTCATTACGAGCTGATAAAATAATCAAGTCAAAAGGTTTAATTGTCATGTCTTCGATTTCATCTTCATCATCATCATCTTGTTCTACAAGATAAGGGTCCATGTCATTGGCTGGGTAGTAACAATTACCAAGAGAACCACTTCCAAAAATGTCAATGCCTTCATCCTCGTCGTCATAATGATCCATGTCAAGTTCTTTGAGGCCATTAGCAATATCATCAACCTTGTGCTGCCTTTGAAAATCTGAAGACTGATTCCCAAGAGCATTTGCTGCTGCTATTGCCTTTGCCACTGCGTCGGTATTTTTATCAGTTTCAGTATCCATATCTTCACTTTCTTCATCACTATCTTCATTATCATCACTCTCTGCTACAACGTTACACTTCAATAACTCTTGAATCTCCTCTTGAGTAGGCGGTTCAGCAGAATCTGGTAGGACCTTTGCAACACCCTTAGGAACCCAACACACTGCTGCAATCATTCTGCACCTTATG 4 2 3' arm Pinus_banksiana mirnest mir-598 0.0007 100 -28.7 ......(((((((((((...((((((((((((((.....(((((....((((.((..(((.............))).)).))))(((((....((((.......))))..((((......)))))))))...)))))...))).))))..............))))))).)))))))))))..... (-28.7)