mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCATCATCATCATCATCATCA AGGATGCCTATGATATGCGC GGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCCGATGGTAAGCATCATCATCATCATCATCATCATCAGCATTCTGGAGCGT GGGGGGGGCAGAGTATGTTTCTCTCCATGTCCGCAAGAGCAACCGGGCGGCGTTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCCGATGGTAAGCATCATCATCATCATCATCATCATCAGCATTCTGGAGCGTGCTGTGGCGGAGACGGTGGCGATGGGAAATTGCAGTCCGCGGCTGATAAAAAGAGCAAGGAATGAACCTGAATTGGAAGTGAAGCTGTTGAGATTTGCGGCCTTCGCGACCGCTTTTGTTATGGTTAGCACATTGAACTCTTTTGCAGTAGATGTTTGGCCTGCAAATGATGATATGGATTCATATCGTTATTATACTATTTTGTCCTTTTAATTTAACAGTCCTTCAGTTGTCTTCAAGAGCTACGTACTTCTTCCTGTTGTTGCTACTGGAATTCATTGCCTACTGTGAAATCGCGTTGAACACTTTTCTTGTAGATACTTGACTTACAAATGCTGATAATTTATTCATGTTGTGCTATTTTTCATTTATTATATGACAGCCATTCAGTTATCCT 5 1 3' arm Pinus_banksiana mirnest 100 100 -31.4 .(((.((....((((((((((.((.((((...(((((((((.....((..((.((......)))).))....)))).)))))...)))).)).)))))))))).))..))).. (-31.4)