mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAGGCATTGACTGGTGATGA ATCACTCACGTCCTTGCATTCTT ACCCAGCATTGGGAGGCATTGACTGGTGATGAGAAGCACTTTATCACTCACGTCCTTGCATTCTTTGCTGCCT TCAATAATGGGTGTGATGGCAGAGGAGCCCTTGTTGGTAGAGAATCCCCAGAGGTTTTGTATGTTTCCCATTAAGTACCCTGAAATCTGGGAAATGTACAAGAAAGCTGAAGCTAGCTTCTGGACTGCGGAGGAAGTTGATCTCTCTGAGGATACCCAGCATTGGGAGGCATTGACTGGTGATGAGAAGCACTTTATCACTCACGTCCTTGCATTCTTTGCTGCCTCTGACGGCATTGTTCTCGAAAACTTGGCTGGGCGTTTCATGAAAGAGGTTCAAGTTCCAGAGGTGTGCATACGTTTTTCTATACATTCCTCTTTTCTTTATTTCTGTTATTTCTTTTCGTTTTCTTTTCCTTTTTACAGTTCTTTAAAACAAGAATAAGAGAATGGAACTCCTGCAACATTTTTGCCCTGGCGTTTCTTAGGCAATCAATGGGCTGAAATTTGAATATGGGGTGGTTGTGATAGATTGAATATCTAGTTGCTCGATGGCAGCTGAACTGACTTTCATACATTCCTATTTGTTCTTAAACTCTGCGCGGTGGTTAGAACAAGTGTTTTGTGTTATTGATGTGTACAACTCGCGGTTTCTTTCAGGCTCGTGCATTTTATGGGTTCCAGATTGCCATTGAGAATATTCACTCAGGTACTATTTGAAAAAATGAAGGGGTTTCTTTTCTTCCCCTCTACCAATTTCATGACTGAAGTTACAGCATTCTTCATGGTGTTGGCCCCTTCCCCTTTTGCAGAGATGTACAGTTTACTGTTGGAGACATATGTCAA 4 2 5' arm Pinus_taeda mirnest 100 100 -24.5 ...(((((..((((.(((..(((.(((((((((......)))))))))...)))..))).)))).)))))... (-24.5)