mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTTCTTGACGTCTGGACCAC GGTTCAGTCATCAAGAACACC AAGAGGAAGAGGAAGCGATGGTGTTCTTGACGTCTGGACCACGAGGGTTTGCGTTACGTTGGGCATGAATAAACAATCATCTACCGCGGTTCAGTCATCAAGAACACCTTTGCTTTCATTTACATG AAAGAGGAAGAGGAAGCGATGGTGTTCTTGACGTCTGGACCACGAGGGTTTGCGTTACGTTGGGCATGAATAAACAATCATCTACCGCGGTTCAGTCATCAAGAACACCTTTGCTTTCATTTACATGCCTTTCTGACCAATTTCAGCCGAAAGNAATCACAGCAAGGGGCACTTGACGACTCAGAAGNNNTCCTTCCATCTGGGTANTTTTCTTTNNGTTCNTGT 4 0 5' arm Pinus_taeda mirnest 100 pta-MIR951 4e-50 -38.5 ..........((((((((.(((((((((((...(((((((.(((((..(((..(((..(((....))).))).)))...)))..)).)))))))...))))))))))).))))))))......... (-38.5)