mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTACA ATTCTGGTGGTGCTGATGAAT CTCACTTTTCGAACAACAAGTGATTCTGGTGGTGCTGATGAATCGAGAAACGTTTTTAAAAGCAATTTCAAGTACTGTTCCATTTTAACCAAATCATCATCATCATCATCTACATTTGTTTTTGATTTTCGAC AGAGATTATGAATATGGCAATATGGCTCCCGAGTGCACCATGATATATGAAAACACTTGTCTCTACAACCCTCACTTTTCGAACAACAAGTGATTCTGGTGGTGCTGATGAATCGAGAAACGTTTTTAAAAGCAATTTCAAGTACTGTTCCATTTTAACCAAATCATCATCATCATCATCTACATTTGTTTTTGATTTTCGACGTTTTGAATCCGCAGAAGCTGGCCACCAATTGGATCTCTCATCAGACGAAGAGGATGATGAAACCGTCCAACAACGGAGCCAGGGTGTGGATTTTCCTGGTGGTAGAGTTGCCGTCACTTCTAAATTGAGCTTCCTCGCTCAATGATTAGACAAGAGGGTGCAATGTTATCGAGTACTTGACAACAATGGCTATACGATTTCATCTACCACATTCGAACACGTTAATAAGGAACTCGGAGTGAAAATGTATAGTGGCATGGTTACTCTTCAAATCATGGATACAATCTTCTACGAGGCACAACGACAAGGTCGAATATCTTTCTACCTTACCTCGTATGGTGGAGAAGCTATCAACCTAGCATCAGCAGCTGCACTTAGTTCCAACGACTTTGATTTGCCTCAGTATCGAGAACCAAGCGTGTTGTTGTGGCGTGGTTTCACGTACAAGAATTTGCTAATC 5 0 3' arm Barnadesia_spinosa mirnest 100 100 -24.9 ........(((((.((((((((....((((((((.((((((((.(((....((.(((.(((....))).))).))..))).))..........)))))).))))))))....)))))))))))))........ (-24.9)