mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCACTGCCTCTTCCCTGGCT ACAGGGACGAGTTAGGGCATG AGGCAATCGAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTCACTTCTC GTTACTTGTGCAGAATGGAAGGAATGAAAGAGGACGACTCGGCCAGACATGAATATACTAAATGTATATATGTGCATAACGGTAGGCAGGCAATCGAGACAGGGACGAGTTAGGGCATGGGAGTTGCATATGCAGAAACGTCTGCTTCTGCCATTCTTATGCACTGCCTCTTCCCTGGCTCACTTCTCCTATTACATGCCTTTTTCTCTGCAACTTCTCTTATTTTTAAAGTTTCAGTTTTTCTCAGTAAATAACAAAGATTAGGTAAGCTGGCTTTGTGCAGAGTGAAGATTCAATCTCACGGTGATTGATCAATGCAGTTTTGTGACCATCTCATCATGTCAATGGGCATTGAGGCCATTACTTAGAATTTTTTAAATGTAACGTGGAAAAGGGTAAACTATTTCATCGTTTTCATGGGCATTGAGACCATTACCTTGAAATTTTTTACTGTAATCATATTGGGAAAAGAGCATTACCAATTCAGTGATCTGATATGATCAAATTTGTCCAAGTTCTGGTCTTGTTCAGTCTGAAAAGATTCAAATGGGCATTAGTTTGGTGAATTTTTATGCTCTTGGGATTCTTTGTTTCTGAATTCACAGAATGGCTGGGTGATGAAGTTTGTATTACCATTGCCAATATTGCCTAGAATTTGGTCTCTGAATTCACAGAATGTATTCAATTTGGTCTCTGAATTCACAGAATGTATTCAATTTTGAACAGCGAAGCTATTCATTCCAGCTTGAATATGCTTTCTGGTACCAATAGATTAATAATATTGATGAGGATTTGCCTCGTGCCGAATTCGGCACGAGGAAGTA 4 0 3' arm Pinus_taeda mirnest MIR408 0.00009 pta-MIR408 1e-43 -42.1 ........(((.((((((.(((.(((.((((((((((.(((...(((((....)))))...))).)))))))))).))).))).)))))).)))....... (-42.1)