mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACTTCCCAATTCCGCCCTTCA AGGTGGTGGAATCGGAGAGTTT CGTTGGAAGGAGAGGTGGTGGAATCGGAGAGTTTCAAGGATCAGATGAAGCTCCTTTAGAAAACAATCTAGAAGAATATAGGCTCAATATCGACACTTCCCAATTCCGCCCTTCACACGTGAAC ATATTAAACTGTTCTTCGTAAAGCAAAAAGTTGAGCATAATCTCTTTATGGCGTAGGGTTTTTGCACTTTTTTTTTTGCTTAGTTTATTCGTAGATTGAATTTCACGCTTGTAATGACGCGATTCCTATTCAGATTTTGCCTTTATCCTCTGATTCAAACAAATCTTCACACTCACTCTTACGTAGATCGGTTATTTGAAATAGATCGGTATCTGGAACTAGAAAATGAAGATGTTTTTTGAGTTTTTGATTTGAAGAAATCTTCACATTCACTCTTACGTAGGTCGGTTGTTTGAAATAGATTTGTATCTGGAATTAGAAAATGAAGATGTGTGCGTTTGTGATTTGAAGAAATCTTCACACCCACTCTTACGTAGATCGGTTATTTGATATAGATCTATCTGGAATTAGAAGCTTAAGAGGTGTTGAGTTTGTGATTTGAAGGATGGAGGAGGTTGGAAGATCGAAATCATGGACGGAGGAGCTGGCGAGTCTCGTGGATGATACCGGAATACGATACACCGGCGGCGATCAGACGGTGAGTAGCCTTTCGACGCCGTCGTTTGAGTTCAAGACTGCGTCGTTGGAAGGAGAGGTGGTGGAATCGGAGAGTTTCAAGGATCAGATGAAGCTCCTTTAGAAAACAATCTAGAAGAATATAGGCTCAATATCGACACTTCCCAATTCCGCCCTTCACACGTGAACTGACTTTGGCTTCCACCCTTCTTTCTTGAGCTTTTTGGTTAACAAGTATATACCCTCACAACTTTTCGTTTGCCTTACGTGCTGAAC 3 1 3' arm Barnadesia_spinosa mirnest 100 100 -26.9 ..((....)).((((.((((((((.((.((((.((........((((.(((((.((((((......)))))).))......)))...)))))).)))).)).)))))))))))).......... (-26.9)