mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGAAGCAGGGCACGTGCA CACGTGCTGTCCTTCTCCAAC CATTGGATGAGAAGCTCTTGATGGAGAAGCAGGGCACGTGCAAATCTTCATCTCATTCATTCCGTCAATGCATAAGAATATTTTGCACGTGCTGTCCTTCTCCAACACGACTTCCTCACCCTTA TACACAAACCTCACTCTCAACTTCTACAACACTTTCATCAAACACAAACCTCACTCTCAACTTCTACAACACTTTCATCAAACACAAACCTCACTCTCAACTTCATCACTTCATTGGATGAGAAGCTCTTGATGGAGAAGCAGGGCACGTGCAAATCTTCATCTCATTCATTCCGTCAATGCATAAGAATATTTTGCACGTGCTGTCCTTCTCCAACACGACTTCCTCACCCTTACTTCTCTCTTACTCACTCACTTAATTACTTGGTATTTTAAGCCTTATAATTCTCTACTATAATGTTTCTAATTTGCATCATGAACTCTTCTTAAGCTATTTATAATGTAATATCAACACATAAGTCTCTTTTTTTTGTTACTGCTGAATTTGTTTTTCTAGGTTGAAATTGAAACAAAGGAAAGGACATTATTGTACCTGACAGTGTAAAAGCACTCACTTTCAGAATCTGAGGACAATTGGGTTGTTGTTTTGGAGGGTTAGACTGAAGTGAAGTTAAGTGAGACACGCAAGAAAAAGAAAAACAGACAAGATCCTTAGGATGTAAAACAGAAATGTTGTAATGTAATCCAAAAGGATCAAACATGTCACAAACTTAGTACCACGGCTTTCTTGTCCGAATGCTCACTATATTTTACTCCTCACGTCNAAATCTATCTTATGTTAACAAAT 3 0 5' arm Pisum_sativum mirnest MIR164 0.000000002 vvi-MIR164d 0.0000000001 -42.5 ....((.(((((((.((.((.((((((((...((((((((((((......(((.((.((((.....)))).)).)))....))))))))))))...)))))))).)).))))).)))).))... (-42.5)