mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCTTCATCGTCATCACAAG TGTGAAGAAGAGGAAGATGGA ACGCGTCCGAGCGAATGGAGGATGTGAAGAAGAGGAAGATGGAGGATGATAATATTTTAATCAACGGCCAAGATTTTAATTCATCTTCATCGTCATCACAAGATCACCTGCGTTCTTTACT CCACGCGTCCGCCCACGCGTCCGAGCGAATGGAGGATGTGAAGAAGAGGAAGATGGAGGATGATAATATTTTAATCAACGGCCAAGATTTTAATTCATCTTCATCGTCATCACAAGATCACCTGCGTTCTTTACTCGACCCTCTTTCCAAGTCCCAGCTCGTCGATCTCCTCTCTAGACTGCATTTCGAGTGCATGGTGAAATAGAAGAAGGAGCTGTGATCTATGACAAAGCAACAGGAAAATCACGTGGCTATGGTTTCATAACATACAAGCACATGGAGTCAACCCAGAGTGCGCTAAGAGCACCTAGCAAGTTGATTGATGGGTCGGTGGGCTGTCTGTAATTTAGCTTGTGAGGGATTAAGGGGGGTGAGTGCTGTGCCTGATTTAGCACAAAGGAAGCTCTACTTTGGGGGCCTGTCACCAAAAGTAACAACTGAGGGGCTGCTGACCTTCTTTGGAAGACATGGTGAGATTGAGGAAGGTTCAGTTGCATATGACAGGGGACCCCAATGAATCCCGTGGATTTGGGTTTTGGTTAATAAAAAAACGTCGAGGGCGACAAGGAGGCCCGAAGATGATCCCCCAAAAACTCCTGGGGGGGAGGGACTATCGTTGGTGAAGCTTGCTGGATGCCCGGGGGGGCAGGGCCCGCGAAAACGCAATTTACCCGCGGCGTGGGGTCCCGGGGCCTTTGGCTGTGGGGACGGGGGTTTCCCCGGGCGGGGAAAGGCCCTTGCAGCCCCCCCCCGTGGGTGCTGCTTGTCACCCGAGGAGGGACCAGGTAGGCAAGGGTTTCTGAGGGAGGGCTGAAGCGGCGCCGAGGGGGGTCGCAAGGCCCACCCGATGTGTTATACGCGTGGGCCCCCGAAAGAGAACAACATTGGGCCAGCCGGAAACACCGGA 5 0 3' arm Poncirus_trifoliata mirnest 100 100 -27.3 ........(((((...((.((.(((((.((.((.(((((((((...(((....(((((...........))))).))).))))))))).)).)).)))))...)).))..)))))...... (-27.3)