mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTGGTCATTTTGTTTATAGG TGTGAACATCTTGACCAGGGG ACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCAAGGACTTCTGGGAANAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGTGTCTGATCCCTGTGAACATCTTGACCAGGGGGATNAAGG GGACTCCAATCTCTGAGTTTGCTTCGCTCTCCACGCCTTCTTTCTCTGACTCTCTCTCTCTCTCCGTGGAGTGCGTTGTTTCGGACCGAAATACCCTTGTGGAGAAAGCTACTCTCGAGTTGTTTTTGTGCGCTTGGTTTTTGAGGCTATGAGAAGAGGATACTTCTTTTTCTGAGGTGGAGACAATGATTTTAACAAAGCAATATCGTTGTATACACTCCTCGAGTTGTCAATGCACAAAAGGGCATCTAAGTGAAGACGTGATTTTTTTAGTATTTCAACAGCTGAACTGGAACCCTAAGTTCATTGCTACTTTGTCCTGTGTATGCAAATGGTTTGATGATCTTGCCAAGCGAGTGTTATGGAAGGAGTTTTGCCGAACAAGGGCTCCAAAGATGATGCTTGATCTGCAATCTAGTGGAAGTCACAGTGTTGATGGGAATTGGAGGGCACTTGGGAAACTGCTTATTTACTGTTCAGGATGTACAAAGGGTGGCCTGTTCAATAACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCAAGGACTTCTGGGAANAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGTGTCTGATCCCTGTGAACATCTTGACCAGGGGGATNAAGGGGACCTNGGGGTTTTTTCNAGGAATTTTCAAGTCATTTTCATGTCAAAGGNTCGGAAATGCTAATTAAA 3 0 5' arm Populus_tremula_x_Populus_alba mirnest 100 100 -38.7 .........((((((((((...((((((((((....(((.(((.(((...)))..)))..)))...((((((......))))))((((((((...))))..))))...))))))))))...))))))))))........ (-38.7)