mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAAGATCATCCCCCATGCTGT AGTTCAGGGGGATGAGCTTGGA GGGACCATTCGAGGACAAGATCATCCCCCATGCTGTGTCATGGTTTACTGGGGAGGCAGTTCAGGGGGATGAGCTTGGATTGGATGATGAT GGGACCATTCGAGGACAAGATCATCCCCCATGCTGTGTCATGGTTTACTGGGGAGGCAGTTCAGGGGGATGAGCTTGGATTGGATGATGATGATGGCGAGGATGATGAGGAGGATGAGGATGACGAGGATGAGGAGGATATTGACGAGGATGACGACNACGAGGATGAGGAGGATATTGACGAGGATGAGGATGATGAAAGCAAGACCAAAAAGAAGTCATCTGCTGGGAACAAGCAGAAAAGTGGAAAGGGACAAGTTGGGGATGGTCAGCAGGGTGAGCGGCCTCCAGAATGCAAGCAGCAATGAAGTTTGATTGCTGCAGCATGCTTGTCAAGTGTTGATGCCATGTTTGGAAGAGGANATAGGAAGGGGCGTTGAATTTTTGGATGTTCATTCATTTCTTTTCTTTTCTTTTCTTTATCTTTTTTTTTTTTTTCCCCTTTCCCTTNA 3 1 5' arm Populus_tremula_x_Populus_alba mirnest 100 100 -37.8 .....(((((((...((((.(((((((((..(((((.((.(((....)))..)).)))))...))))))))).))))..)))))))..... (-37.8)