mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAAGCTGCCAGCATGATCTA GGTCATGCTCTGACAGCCTCACT AGAAGTTCACAAGGGAAAAGGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAGTATAGAAGCGAAGAACTAACCCTAGCTAGGTCATGCTCTGACAGCCTCACTCCTTCCTGTTGTGGGGGC GAGGGTTTTTCTTTCTTCCGTTCTTTCTTTCCTCCGTGGTAGTTTCTGTTTTCCTTCGATGGAGAAAAGAAAGGCTTTCACTCCTCTCGTCAGTTGTCTCCGTTCTCTTTTTCCATGTTTTCATCTATATGTGTGTATTTTTTTAAGATTTTTTTTTGGTTTTTTTCCTTAAAATATTTCCTTTTGTAGAGCCAGAAACTGTTGTTCTATACCGTTCTATTTTTCTCAATGGAGTTTTTGCTTTTCAAAGATAAATTTGTACAGTCTTCAGATTATAGTCTTGAAGGTTTATCTCCATTCTCTATAGGCACATGTTTGAAACTACTTTCTTGTACTTGCACCTTCCTGATCTATCTCCTTCAATAAGAAGCATCTTTCTGCTTATAAAAAAAAAATTAAAGAAGAGGAATCTTCTGCTCAGTTTCTGTTTTCATGCAATAACGAAAGAACAATGTGCAGGGAGTTGACCTGATCTGTTTTCGTGTGGTTAAAAGAAGTTCACAAGGGAAAAGGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAGTATAGAAGCGAAGAACTAACCCTAGCTAGGTCATGCTCTGACAGCCTCACTCCTTCCTGTTGTGGGGGCCCATAATATATTCCAAACACATTTTTCAAATCTGAAAAGATGTATAGTAACCTCACCTGTAAGTATAT 2 2 5' arm Populus_tremula_x_Populus_tremuloides mirnest MIR167_1 8e-49 ptc-MIR167d 1e-47 -42.7 .....((((((((((((..(((((.((((.((((((((((((.((..((((((....((......))......))))))..)).))))))))))..)).)))).)))))..))))).)))))))... (-42.7)