mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCTCTTCTTCTTGCTGTT CAGCCTGAGAGAGGGAAAC GAGCATGAAAGACAGCCTGAGAGAGGGAAACTACAAAATGTTACACGGCAAAGCTCAGAATTTCCATATGAAGAAGGCTCCTGATGTTACATCATGGCAAAGCTAATTCCTGGTAGAGAAGTATGAACAAACATTATGATTATTTTTTTGATGAACCGAAACCGCCAAACCCCATCATAGCTGCAATATCAGGATCAATATCAGCTTCTTCCTCCTCTGCTGCCTTCTCTTTCTTTTTCTCTTTCTTTCTTTCTCGGCGTTGACGCTTGCGTTCCTCCTCTTCTTCTTGCTGTTTTAAGATCC TTTTTTTTTTTTTTTTTTGTCACAGAAAATAGGGTAGATGAAACAGTGAAAATGTATTATAACCGTTGAATCTACAGTACATGTCTAGCAAATGAGTGGCTGTTTTTCCTCTAACAGACTTGATTGCTAGGAGAGCATGAAAGACAGCCTGAGAGAGGGAAACTACAAAATGTTACACGGCAAAGCTCAGAATTTCCATATGAAGAAGGCTCCTGATGTTACATCATGGCAAAGCTAATTCCTGGTAGAGAAGTATGAACAAACATTATGATTATTTTTTTGATGAACCGAAACCGCCAAACCCCATCATAGCTGCAATATCAGGATCAATATCAGCTTCTTCCTCCTCTGCTGCCTTCTCTTTCTTTTTCTCTTTCTTTCTTTCTCGGCGTTGACGCTTGCGTTCCTCCTCTTCTTCTTGCTGTTTTAAGATCCGTTCATCAAGATCTTGCTCTGTGAAGCTTCCAGGTTCTCTACGTTTCTTGAGCTTTTCAAATCGCTCTTGGACCTGTTGAAGAGATGCACGCTCCACCCGCATAGACATGCCCAAAGCTCTTTGGTGTTTCTTTCCATTGATGTGATCCAAGTAGTTTGCAGAATCCTTTACCACACACTCACAAACTGAACAGTAGTATCCAGCCTGCTGACTTAGAGGTGCAATTGGTGTAACAACCTGAGTTTTCCCCAACCGAGAGTCGAGATCAACTTCATAGTCCCTATGCTTCAAGGGCTTCCTTTGCACCGGTGGCCCTTTCGATTTAGATTTCCCACGACCCTCGGCTTCCTGTTTTTCACGCTCACGAGCGCGTTCTAAGTACTCTTCTGGATCGAATTTTCTTCTGAATGTATTATCAACACTACCACCAGTATTGTTATTTTCCATTGAAAACACAAATAAAAATTTTGC 4 2 3' arm Populus_trichocarpa_x_Populus_nigra mirnest 100 100 -52.9 ........((((((((..(((((((((.(((....((.(((((..(((.((((...((((.........(((((((((...(((((...))))).(((((((((.((((((((((....(((............((((((......((((.((.........)).))))....)))))))))....)))))))).....)).)))))..........)))))))))))...)).........))))..)))).)))....))))).))..)))..)))))))..))..))))))))....... (-52.9)