mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGAATTGCAGTGCCCTGATT TCAAGGCACTGCAATTCTGAC ACAAAGCCCAAATCAAGGCACTGCAATTCTGACTAATAAATGATATGTAAATTTCAAACGTCTAGCATCGCCACTTGCCAACAGACATTTTAGAATTGCAGTGCCCTGATTAGGGCCTCC TTTTTTTTTTTTTTTTTTTTAATCTGAAACTTGCCATCTTATTCAAAAAAAGTTCTCTTAAATAGGCAGTATATATACCACTACATGTAAATAGGGATCACAATCACATGATAAGATTCTCCCTGAAGAAAAAGCTAATAACATAAGCAACTTCATAGTATCTGCTGAATGATTCCCCAACAAAATAGCATATTTGATGATCTCATAGAAAATAGTTCAGCTATAGCCGACTTGATGATCTCTCACGAAGATTGCAGCATCTCTTTCATTCCTAACAGTAGCAGCGGTCACATTTGCAGCAGCATTTCCCTCCCCTAGCATGGCGGTTACAGGAACAAACAAAGCCCAAATCAAGGCACTGCAATTCTGACTAATAAATGATATGTAAATTTCAAACGTCTAGCATCGCCACTTGCCAACAGACATTTTAGAATTGCAGTGCCCTGATTAGGGCCTCCTTCGTTCACGAGAGACTCCCAGCTTGAAATTTTATACTAAGAAAGTTTGAAATTCCAATCCTGGTTATCAAGTCTACAATCTGTAATAAGGCTCGTTTTTATATTACTCCAAACATTTGACTGACTTGAAAAATTTATAATGAATCCATTAAAAATCATTCAACTGTAGTACAAACTGTTATTTGTACCAATAAATGCAGAGCAATATCCTTTAAGAAAAACAAAAGAAACGGATGTAGTGCTGTTATTTAACTCCAATCTCGTGGATTATGCGGGAGAAGAAGCTGATGACAACACACACTGTCTGAGTTTTTCAGACTCTAAACCCATC 1 0 3' arm Populus_trichocarpa_x_Populus_nigra mirnest 100 ptc-MIR1447 2e-52 -41.9 .....((((.(((((.((((((((((((((((..(((...(((.((....)).)))...((((.(((........)))....))))))))))))))))))))))).))))).)))).... (-41.9)