mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCTTCTTCCTCTTCTC GAAAGGAAGGGGAAAAGGGA GTATTATTTTAAGAAAGGAAGGGGAAAAGGGAAATTGAACTTGATGGTTCAATCGCATGGCTTCCTCTTCTTCTTCCTCTTCTCATCAGACTC GGCACGAGGAAAAGTATTATTTTAAGAAAGGAAGGGGAAAAGGGAAATTGAACTTGATGGTTCAATCGCATGGCTTCCTCTTCTTCTTCCTCTTCTCATCAGACTCGCGTTCCTTTCCCTTCCGACCCAGGTGGTAAACCACTAGATGATGTTCCGATCCATGTTGTCACCGAACCTTCTCAACTTCCGGTCGAGTTCCTTAACCCTTCTGCCGCAAAGCAATTGATCATTGGTTTTGACTGTGAGGGTGTTAATCTCTGTCGTCATGGAGCTCTCTGTATTATGCAGCTTGCATTCCCGGATGCTATCTACTTGGTTGATGCCATTAAGGGTGGAGAGTCGCTTATCAAAGTGTGTAAGCCTGCACTTGAGTCGAGTTACATCACAAAAGTTATTCACGATTGCAAACGGGATAGCGAGGCATTATATTTTCAATTTGGCATCAAGTTGCACAATGTTGTTGATACCCAGATTGCTTATTCTCTGATAGAGGAGCAAGAAGGACGGACTAGATTGCCAGGGGACTATATATCATTTGTTGGCCTCCTTGCAGATCCACGCTATTGTGGTGTATCTTATCTGGAGAAGGAAGAGGTTCGTGTTCTCCTCCGACAGGATCCTATGTTCTGGACATACAGGCCACTATCCGAAATGATGATCCGTGCAGCTGCAGATGATGTTCGTTTTCTTCTCTGCATCTATTA 2 1 3' arm Populus_x_canadensis mirnest 100 100 -26.5 ...........(((((((((((((((.(((((.((((((((....)))))))).((...))))))).))))))))))).)))).......... (-26.5)