mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGAACCGAGCCGAACCGAACC TTTGGATTGGTTTCGGATTCGGT GAACCGAACCGGTTTGGATTGGTTTCGGATTCGGTTCCATGTCTTCAAAAATCGAACCGAGCCGAACCGAACCGGTGAAACT AAATAAGAACTCTGGAAAATACTGAGCTTTAAGCATCCGTGCGATGAGGGATTTGGGAAATTCCAGAAGACGCCACCCTTGTTTGTCAAGCAAAGCCTAATTAAAGCACACAAGTTTTGAAAACCGAGACCTCCTTCAGTTTTGTGCTTACTAAGAGCCTTCTGGGTTTTCCAATGGATATCTTTTCCACTACCTTTAGACCACCAATAACGAGCAAAAATACTCTCAATTTTAGAACATAAGCCAGCTGATAGATGAAAGACACTCATATTATAGGTAGGCATCGCCTGACACACCGCCTTAATAAGCACCTCCTTCCCAGCTGTGGAAATAAGTTTACCTTCCTATCCTGAAATCTTCTTCCAACGTGATCTTTGATAGCTCTGAACATATGTTTTTTTTATTTTTTCCAGCTATAATAGGAAGTAGGGGTGGGCACTCAAACCGGCGAACGGAAAATCTGAGCCGAACCGCACCGAACCAAATCGAAAAAAAATCGAGTTGACCAAAAAGTTAAAAATCGGTCAAAAACCGAACTGAACCGAACCGGTTTGGATTGGTTTCGGATTCGGTTCCATGTCTTCAAAAATCGAACCGAGCCGAACCGAACCGGTGAAACTAAAAAAAAA 1 2 3' arm Prunus_persica mirnest 100 100 -31.2 .......((((((((((.((((((.(((.(((((((.............)))))))))))))))).))))))))))...... (-31.2)