mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTCCCTTAATG CTATGGGACGGAGGGAATCTC TGCTAAAAACTACTCCCTCCGTCCCTTAATGCAAGACGTTTTTTTGACACTATGGGACGGAGGGAATCTCCAACTCG ACCGATTTTTTTTTTTTTTTTTTGATTGGGCACAAAATTTGACTTATGATGAAATGAAAATCAGTTGACCGTTAGTAAGACACACCCGAAGAAAAAAGAACAAAAACTAAAACAACATGAGCGCCTAGCTAAACTGGGTTAACACAGAGAAACACCAACACCGAGCTTGCTAAAAACTACTCCCTCCGTCCCTTAATGCAAGACGTTTTTTTGACACTATGGGACGGAGGGAATCTCCAACTCGCCCCCCTCAACCATGAGGAAACGAGACCCTCTGTCGATCACCTTGTGGCCATTCCCTGTCACCCTGCTCAAGTCTTCACATGGGCTGATGTCAAACTTGAGTTCAGCCTTCTCCCCTGCTTTGAGATGCTGGCTACGGAACGCAATCAGCTGCCTCGCTGGCCGGCCGTCCGTCACATTGGGCCACCGGAGGAACATCAGCACAGAGTGCTTGCCGTCCATCGGACCGTGGTTCTGCACCTCCACCACCATGGGGATCTTGCCGTCTATTGCAGGACGGGACGCGAGACACTACCAGTGGCAGCCGCCACTACGAATAAAGTTTGCAAGCAAATAATGAAGCGGGCTGGAGCAGATGGTAGACTGGCAACATGGCGTCCTGGACGTTGTCGACGGCCTCTGCCATGAACCGTCGTCTCCGACCTCACCGGTGTCAGGCCCCAAGTCAACCTGATGCTTGAAATAAAGTTGCTTGCATGTCATCAAAATCCAGTTCNNNNGCTGC 5 0 5' arm Pseudoroegneria_spicata mirnest 100 osa-MIR1436 0.0009 -29.5 .............((((((((((((.((.(((((((.....))))).)).)).))))))))))))............ (-29.5)