mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTACTCCCTCCGTCCCAAA TAGGACGGAGGGAGTATATA TAGATATATACTACTCCCTCCGTCCCAAAATAAGTGTCTCAAGTTTAAACTTGAGACGAGACACTTATTTTAGGACGGAGGGAGTATATAGTAGA GCATTTTTTTTTTTTTTTTTTGCCAAACAAGTAAAATGGACAGGCCAAGTAGGGATCAACCACATTGGTACGCGATACATGGGCAACCATTGCCATGGAAAGAATCAATCAAAAGCCCAACCAAGGTCCAACCTTTGATCACTGCTAGTTCATTATCAAATCACCAACGTCAGCCATGGTAGATATATACTACTCCCTCCGTCCCAAAATAAGTGTCTCAAGTTTAAACTTGAGACGAGACACTTATTTTAGGACGGAGGGAGTATATAGTAGATTAGATAAAGAACCGGAGCTGACCAGCTAATCGTCAACCCCAGGAACGGGGGCTCCTCGCCTTGACCTGCTTGTTGATGCGGAGACGGAGGACGATCCCTCATTCCTGCGGCGGCACGTCGGCCGACACTGGCAGGTACCTGCCGCCCGCGTCCATGGCCGCCTCCACGCCGGGGACGACGCAGCTCCTCACCTTGGCGTCCAGCATCAGGACGTCCATGTGGTCGGTGTCCGCGTCCACGGGAGTGTGCACCCACACCTTACATCTGTACCACCATGACGCCGCGCTTGCTCGCCGCCAACAAGAACAGCTGCCCCCGCTGTGCCGGCTGCATCTGGACCTCCAGCTCCAGCATGGACCCGTAGGCGATGTCAGTCACGGGCCACTGGTGGCGCTCGGCAAGGTGGCCACGGAGCGCCGGCGACGGGCCGAGGAAGCCGCAGCCGGGCTCAGGGCAGAGGCACGGCGCGTGCGGGCACACCGCACACCAGGCGGTGGTCGCCAACCATGCAGTACACCATGGAACTCCCGCAGCAGTACGCCTCCTTGGGGCAGGGCACCCTCACCGCTAGGAGGTAGCGGTCACAGG 1 1 5' arm Pseudoroegneria_spicata mirnest MIR1122 0.0000000003 far-MIR1122 0.0000003 -46.6 ......((((.((((((((((((((.((((((((((((((..((((.......)))))))))))))))))).))))))))))))))))))..... (-46.6)